Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   EQH29_RS08885 Genome accession   NZ_CP035251
Coordinates   1773886..1774707 (-) Length   273 a.a.
NCBI ID   WP_001820424.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901935     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1768886..1779707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH29_RS08840 (EQH29_09385) - 1769430..1769747 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH29_RS08845 (EQH29_09390) - 1769744..1770043 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH29_RS08850 - 1770241..1770303 (-) 63 WP_219335288.1 hypothetical protein -
  EQH29_RS08855 (EQH29_09400) - 1770328..1770519 (-) 192 WP_000291826.1 cell wall-binding protein -
  EQH29_RS08860 (EQH29_09405) - 1770680..1771354 (-) 675 WP_000725744.1 LiaF transmembrane domain-containing protein -
  EQH29_RS08865 (EQH29_09410) - 1771360..1771806 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH29_RS08870 (EQH29_09415) - 1771920..1772423 (-) 504 WP_000800944.1 phosphatase PAP2 family protein -
  EQH29_RS08875 (EQH29_09420) - 1772420..1772782 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  EQH29_RS08880 rcrQ 1772848..1773879 (-) 1032 WP_000506432.1 ABC transporter ATP-binding protein Regulator
  EQH29_RS08885 rcrP 1773886..1774707 (-) 822 WP_001820424.1 ABC transporter permease Regulator
  EQH29_RS08890 (EQH29_09430) - 1774723..1775193 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  EQH29_RS08895 (EQH29_09440) - 1775317..1776033 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH29_RS08900 (EQH29_09450) ply 1776916..1778331 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  EQH29_RS08905 (EQH29_09455) - 1778342..1778752 (-) 411 WP_000595758.1 hypothetical protein -
  EQH29_RS08910 (EQH29_09460) - 1778745..1779353 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30473.10 Da        Isoelectric Point: 5.9135

>NTDB_id=337771 EQH29_RS08885 WP_001820424.1 1773886..1774707(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901935]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=337771 EQH29_RS08885 WP_001820424.1 1773886..1774707(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901935]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.544

100

0.601


Multiple sequence alignment