Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   EQH31_RS09285 Genome accession   NZ_CP035249
Coordinates   1812357..1813178 (-) Length   273 a.a.
NCBI ID   WP_000601689.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901938     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1807357..1818178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH31_RS09240 (EQH31_09805) - 1807901..1808218 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH31_RS09245 (EQH31_09810) - 1808215..1808514 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH31_RS09250 - 1808712..1808774 (-) 63 WP_219335539.1 hypothetical protein -
  EQH31_RS09255 (EQH31_09820) - 1808799..1808990 (-) 192 WP_000291826.1 cell wall-binding protein -
  EQH31_RS09260 (EQH31_09825) - 1809151..1809825 (-) 675 WP_000725751.1 LiaF transmembrane domain-containing protein -
  EQH31_RS09265 (EQH31_09830) - 1809831..1810277 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH31_RS09270 (EQH31_09835) - 1810379..1810894 (-) 516 WP_000800937.1 phosphatase PAP2 family protein -
  EQH31_RS09275 (EQH31_09840) - 1810891..1811253 (-) 363 WP_000078808.1 DUF2200 domain-containing protein -
  EQH31_RS09280 rcrQ 1811319..1812350 (-) 1032 WP_000346791.1 ABC transporter ATP-binding protein Regulator
  EQH31_RS09285 rcrP 1812357..1813178 (-) 822 WP_000601689.1 ABC transporter permease Regulator
  EQH31_RS09290 (EQH31_09850) - 1813195..1813665 (-) 471 WP_000360533.1 MarR family winged helix-turn-helix transcriptional regulator -
  EQH31_RS09295 (EQH31_09860) - 1813789..1814505 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH31_RS09300 (EQH31_09870) ply 1815386..1816795 (-) 1410 WP_001284354.1 cholesterol-dependent cytolysin pneumolysin -
  EQH31_RS09305 (EQH31_09875) - 1816806..1817216 (-) 411 WP_000595758.1 hypothetical protein -
  EQH31_RS09310 (EQH31_09880) - 1817209..1817817 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30545.18 Da        Isoelectric Point: 5.2610

>NTDB_id=337691 EQH31_RS09285 WP_000601689.1 1812357..1813178(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901938]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLMRTTNDITQVQMLITMDLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=337691 EQH31_RS09285 WP_000601689.1 1812357..1813178(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901938]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGATGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGACTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTAAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593


Multiple sequence alignment