Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DEIDE_RS13420 Genome accession   NC_012526
Coordinates   2817383..2818492 (+) Length   369 a.a.
NCBI ID   WP_012694508.1    Uniprot ID   C1D0B8
Organism   Deinococcus deserti VCD115     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2812383..2823492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS13395 (Deide_23460) - 2812830..2813063 (+) 234 WP_012694503.1 hypothetical protein -
  DEIDE_RS13400 (Deide_23470) - 2813090..2814604 (+) 1515 WP_012694504.1 dihydrolipoamide acetyltransferase family protein -
  DEIDE_RS13405 (Deide_23480) - 2814784..2815197 (+) 414 WP_012694505.1 hypothetical protein -
  DEIDE_RS13410 (Deide_23490) - 2815214..2815873 (+) 660 WP_012694506.1 response regulator transcription factor -
  DEIDE_RS13415 (Deide_23500) - 2815985..2817361 (+) 1377 WP_012694507.1 HAMP domain-containing sensor histidine kinase -
  DEIDE_RS13420 (Deide_23510) dprA 2817383..2818492 (+) 1110 WP_012694508.1 DNA-processing protein DprA Machinery gene
  DEIDE_RS13425 (Deide_23511) - 2818489..2818800 (-) 312 WP_012694509.1 hypothetical protein -
  DEIDE_RS13430 (Deide_23520) - 2818840..2819808 (+) 969 WP_012694510.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 38480.17 Da        Isoelectric Point: 6.5003

>NTDB_id=33740 DEIDE_RS13420 WP_012694508.1 2817383..2818492(+) (dprA) [Deinococcus deserti VCD115]
MPLPDLPTSPAVLPEPGKAELLALLTLRFTPHLGPRRIESLRRHFGTACEALSAPFSALREVPGLDSRSIAALGNAKARA
QAEAELHLAQQLGVTLLGRGLSGYPQALEALGDPSPVLWVRGSLPELPVVPRSIGIVGTRAASPHALSMARMLAAELAHA
DVTVVSGLARGVDTAAHAAAVEAGGQSIGVLGSAVNRIYPPENEALSEQLTLVSEYPLGTGPAQHHFPTRNRLIAALSAG
TLVVEGEFKSGSLITATHALECGRTVFAMPGRAGDPRAAGPHQLLRDGAVLTETARDILQEFGWGNAPARPLPTLPPDQA
AVLEALTAPATLDDLRAATGLCLPELQTALVMLQLQGLAEESGGRWVRR

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=33740 DEIDE_RS13420 WP_012694508.1 2817383..2818492(+) (dprA) [Deinococcus deserti VCD115]
GTGCCTCTGCCTGACCTTCCGACATCACCCGCTGTTCTGCCGGAACCCGGCAAGGCTGAACTGCTCGCGCTGCTGACCTT
ACGCTTTACACCTCACCTTGGACCGCGCCGGATTGAAAGCCTGCGCCGCCATTTCGGCACAGCGTGTGAGGCCCTGAGCG
CTCCTTTCTCTGCCCTCAGAGAGGTCCCAGGGCTGGACTCCCGGAGCATCGCAGCCCTGGGAAATGCCAAAGCCCGCGCA
CAGGCAGAAGCGGAGCTTCACCTGGCTCAGCAGCTGGGCGTGACCCTGCTGGGCCGTGGCCTGAGCGGGTATCCCCAGGC
GCTGGAAGCCCTGGGTGATCCGTCCCCGGTGTTGTGGGTGCGCGGGTCCCTGCCTGAGTTGCCGGTGGTTCCCCGAAGTA
TCGGCATCGTGGGCACCCGGGCAGCCAGTCCCCATGCACTGAGCATGGCCCGCATGCTCGCAGCCGAACTGGCCCACGCA
GATGTCACCGTGGTCAGTGGTCTGGCACGCGGTGTGGATACGGCGGCGCACGCCGCTGCCGTTGAGGCAGGCGGCCAGAG
CATCGGCGTGCTGGGCAGCGCAGTGAACCGCATCTATCCTCCCGAGAACGAGGCGCTTTCAGAGCAGCTCACCCTGGTCA
GCGAGTATCCGCTGGGCACAGGTCCTGCGCAGCATCACTTTCCGACCCGTAACCGCCTGATTGCGGCCCTGTCGGCGGGC
ACGCTGGTTGTGGAAGGTGAATTCAAGTCCGGCTCGCTGATTACTGCTACCCACGCGCTGGAGTGCGGGCGGACCGTATT
CGCCATGCCGGGCCGGGCTGGCGATCCACGGGCAGCCGGCCCCCATCAGCTGCTGCGTGACGGGGCAGTGCTTACTGAAA
CGGCGCGCGACATCCTTCAAGAATTTGGCTGGGGCAATGCTCCTGCGCGTCCGCTGCCGACCTTGCCGCCGGATCAGGCA
GCAGTTCTTGAAGCGCTGACCGCGCCCGCGACACTGGATGACCTGCGGGCGGCGACCGGGCTTTGCCTTCCCGAGTTGCA
AACCGCCCTGGTCATGCTGCAGCTCCAGGGTCTGGCCGAAGAGAGCGGCGGCCGCTGGGTCCGCCGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(90-292)

DprA winged helix domain (DprA_WH)

(307-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1D0B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.655

95.122

0.672

Multiple sequence alignment