Detailed information NTG0033739

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DEIDE_RS12160
• Genome accession: NC_012526
• Coordinates: 2553884..2555029 (+)
• Length: 381 a.a.
• NCBI ID: WP_012694258.1
• Uniprot ID: C1CYV7
• Organism: Deinococcus deserti VCD115
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2548884..2560029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIDE_RS12140 (Deide_21090)	minE	2549328..2549579 (-)	252	WP_012694254.1	cell division topological specificity factor MinE	-
DEIDE_RS12145 (Deide_21100)	minD	2549581..2550381 (-)	801	WP_012694255.1	septum site-determining protein MinD	-
DEIDE_RS12150 (Deide_21110)	rimO	2550683..2552194 (+)	1512	WP_012694256.1	30S ribosomal protein S12 methylthiotransferase RimO	-
DEIDE_RS12155 (Deide_21120)	-	2552255..2553700 (-)	1446	WP_012694257.1	nitronate monooxygenase	-
DEIDE_RS12160 (Deide_21130)	pilD	2553884..2555029 (+)	1146	WP_012694258.1	prepilin peptidase	Machinery gene
DEIDE_RS12165 (Deide_21140)	-	2555268..2556731 (+)	1464	WP_041227265.1	aldehyde dehydrogenase family protein	-
DEIDE_RS12170 (Deide_21150)	mobA	2556739..2557308 (+)	570	WP_012694260.1	molybdenum cofactor guanylyltransferase	-
DEIDE_RS12175 (Deide_21160)	-	2557712..2558896 (+)	1185	WP_162485465.1	MFS transporter	-
DEIDE_RS12180 (Deide_21170)	-	2559124..2559519 (+)	396	WP_012694262.1	OsmC family protein	-
DEIDE_RS12185 (Deide_21180)	-	2559591..2559980 (-)	390	WP_012694263.1	DUF1622 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40987.71 Da
• Isoelectric Point: 8.6127

>NTDB_id=33739 DEIDE_RS12160 WP_012694258.1 2553884..2555029(+) (pilD) [Deinococcus deserti VCD115]
MIPDVLLVAMAGVLGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHRLTPRDLVPVFSWLGLRGKCRYCRAPIKRRYPL
VELLTGAGYALIALLFPPLTFGWGTLGLMVLFTLLLVSSAIDLDTYTIPDELTLPGVALGLLFALGNAPDSGLPTFAQAV
QGALLGAGLLVTINNLGAWVLRRFRERQFPEFPLGYQQISLGLLAGAWLGPWWGAGVGLVSALINLLARRVIRIPELLTL
GGLLVSVMLGSAGMGPGMILMVQGALAAAGAVSLVCGVYWWIHWRRHREDDTLADDENVDASAMGFGDVKLAAVIGAFLG
WERLLVALVVAVFAGALLGIVQMAMKRENRVKFGPYLALGALVALVWGNEIISSYRTMLGF

Nucleotide

• Length: 1146 bp

>NTDB_id=33739 DEIDE_RS12160 WP_012694258.1 2553884..2555029(+) (pilD) [Deinococcus deserti VCD115]
GTGATTCCTGACGTGCTGCTTGTGGCGATGGCCGGCGTGCTCGGCCTGCTGGTGGGCTCATTTTCCAATGTGCTGATCTG
GCGCCTGCCCCGCGGCGAGAACATCGCCTTCCCGCCGAGTCACTGTCCACACTGTGACCACCGTCTCACGCCGCGTGATC
TGGTGCCGGTGTTCTCATGGCTGGGGCTGCGCGGCAAGTGCCGGTACTGCCGCGCCCCGATCAAGAGACGCTACCCGCTG
GTGGAGCTGCTGACCGGCGCCGGCTACGCCCTGATTGCGCTGCTGTTTCCGCCGCTGACCTTCGGTTGGGGCACCCTGGG
GCTGATGGTGCTGTTCACGCTGCTGCTGGTCAGCAGCGCTATTGACCTTGATACCTACACCATTCCCGATGAACTGACCC
TGCCCGGCGTGGCGCTGGGGCTGCTGTTCGCACTGGGCAACGCGCCGGACTCGGGCCTGCCGACTTTCGCCCAGGCAGTG
CAGGGCGCGCTGCTGGGCGCGGGGCTGCTGGTGACCATCAACAACCTGGGGGCCTGGGTCCTGCGCCGGTTTCGTGAGCG
GCAGTTTCCAGAGTTCCCGCTGGGCTACCAGCAGATCAGCCTGGGCCTGCTGGCCGGCGCATGGCTGGGGCCCTGGTGGG
GTGCAGGAGTCGGACTGGTCTCGGCGCTGATCAACCTGCTGGCCCGCCGGGTGATCCGCATCCCGGAACTGCTGACGCTG
GGAGGGCTCCTGGTCAGCGTCATGCTGGGCAGCGCCGGCATGGGACCCGGCATGATTCTGATGGTTCAGGGCGCGCTCGC
CGCGGCAGGAGCGGTCAGTCTGGTCTGCGGGGTCTACTGGTGGATTCACTGGCGCCGGCACCGCGAAGACGACACCCTCG
CCGACGACGAGAATGTGGACGCCAGTGCCATGGGCTTTGGAGACGTGAAACTGGCGGCTGTGATCGGCGCCTTCCTGGGT
TGGGAACGGCTGCTGGTGGCGCTGGTGGTGGCGGTGTTTGCCGGCGCCCTGCTGGGAATCGTGCAGATGGCCATGAAACG
CGAAAACCGCGTGAAATTCGGGCCGTATCTGGCCCTGGGTGCGCTGGTGGCCCTGGTCTGGGGCAATGAGATCATCAGCA
GCTACCGCACGATGCTCGGGTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

• Type IV leader peptidase family (Peptidase_A24) (109-224)

• Type IV leader peptidase family (Peptidase_A24) (232-340)

3D structure

• AlphaFold DB: C1CYV7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	70.649	100	0.714