Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BSR23_RS00985 Genome accession   NZ_CP043421
Coordinates   174769..175992 (+) Length   407 a.a.
NCBI ID   WP_005491145.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MVP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169769..180992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS00940 (BSR23_000940) - 170068..170397 (-) 330 WP_005459127.1 DUF2500 domain-containing protein -
  BSR23_RS00945 (BSR23_000945) - 170639..171007 (+) 369 WP_005489749.1 hypothetical protein -
  BSR23_RS26755 - 171070..171249 (-) 180 WP_005458791.1 hypothetical protein -
  BSR23_RS00960 (BSR23_000960) - 171986..172606 (+) 621 WP_005481960.1 lysoplasmalogenase -
  BSR23_RS00965 (BSR23_000965) - 172676..172897 (+) 222 WP_025632157.1 YecH family metal-binding protein -
  BSR23_RS00970 (BSR23_000970) - 173016..173600 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  BSR23_RS00975 (BSR23_000975) - 173654..173920 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  BSR23_RS00980 (BSR23_000980) rsmD 173946..174545 (-) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSR23_RS00985 (BSR23_000985) pilA 174769..175992 (+) 1224 WP_005491145.1 signal recognition particle-docking protein FtsY Machinery gene
  BSR23_RS00990 (BSR23_000990) ftsE 176015..176689 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  BSR23_RS00995 (BSR23_000995) ftsX 176679..177647 (+) 969 WP_005481956.1 permease-like cell division protein FtsX -
  BSR23_RS01000 (BSR23_001000) rpoH 177823..178683 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  BSR23_RS01010 (BSR23_001010) glpE 179175..179495 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  BSR23_RS01015 (BSR23_001015) glpG 179495..180337 (+) 843 WP_025579977.1 rhomboid family intramembrane serine protease GlpG -
  BSR23_RS01020 (BSR23_001020) - 180397..180807 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44354.94 Da        Isoelectric Point: 4.2729

>NTDB_id=337307 BSR23_RS00985 WP_005491145.1 174769..175992(+) (pilA) [Vibrio parahaemolyticus strain MVP1]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINN
LTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGD
TFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDS
APHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFID
ALFSREE

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=337307 BSR23_RS00985 WP_005491145.1 174769..175992(+) (pilA) [Vibrio parahaemolyticus strain MVP1]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCG
CCTTAAGCGCAGCCTTAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGCCTGTTCAGCGGTAAAAAAATCGATG
ACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAAC
CTGACAGAAAAAGCCTCTCGTGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGAT
TCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTG
TGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGAT
ACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAACGTAACAATGTTCCTGTGATCGCGCAGCATACTGG
CGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGG
CGGGTCGTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCT
GCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGT
AGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGT
TTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGAC
GCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(123-184)

SRP54-type protein, GTPase domain (SRP54)

(204-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.072

92.629

0.455

Multiple sequence alignment