Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EQH36_RS08695 Genome accession   NZ_CP035244
Coordinates   1719418..1720344 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901945     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714418..1725344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH36_RS08675 (EQH36_09135) treR 1715527..1716237 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH36_RS08680 (EQH36_09140) - 1716270..1717073 (-) 804 WP_000202630.1 ABC transporter ATP-binding protein -
  EQH36_RS08685 (EQH36_09145) - 1717086..1717979 (-) 894 WP_001012092.1 ABC transporter permease -
  EQH36_RS08690 (EQH36_09150) - 1717991..1718800 (-) 810 WP_001850051.1 ABC transporter substrate-binding protein -
  EQH36_RS10865 - 1719221..1719352 (-) 132 WP_000787593.1 hypothetical protein -
  EQH36_RS08695 (EQH36_09155) amiF 1719418..1720344 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQH36_RS08700 (EQH36_09160) amiE 1720355..1721422 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EQH36_RS08705 (EQH36_09165) amiD 1721431..1722357 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  EQH36_RS08710 (EQH36_09170) amiC 1722357..1723853 (-) 1497 WP_000759903.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=337297 EQH36_RS08695 WP_001291293.1 1719418..1720344(-) (amiF) [Streptococcus pneumoniae strain TVO_1901945]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=337297 EQH36_RS08695 WP_001291293.1 1719418..1720344(-) (amiF) [Streptococcus pneumoniae strain TVO_1901945]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment