Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DEIDE_RS03675 Genome accession   NC_012526
Coordinates   750304..750900 (-) Length   198 a.a.
NCBI ID   WP_012692602.1    Uniprot ID   C1D0V5
Organism   Deinococcus deserti VCD115     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 745304..755900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS03655 (Deide_06310) - 746363..747544 (+) 1182 WP_012692598.1 glycosyltransferase family 4 protein -
  DEIDE_RS03660 (Deide_06320) - 747486..748178 (-) 693 WP_041227386.1 glycosyltransferase -
  DEIDE_RS03665 (Deide_06330) - 748241..749494 (+) 1254 WP_012692600.1 MFS transporter -
  DEIDE_RS03670 (Deide_06331) - 749511..750248 (+) 738 WP_083764218.1 polysaccharide deacetylase family protein -
  DEIDE_RS03675 (Deide_06340) recR 750304..750900 (-) 597 WP_012692602.1 recombination mediator RecR Machinery gene
  DEIDE_RS03680 (Deide_06350) - 750929..751219 (-) 291 WP_041227042.1 YbaB/EbfC family nucleoid-associated protein -
  DEIDE_RS03685 (Deide_06360) - 751279..751959 (-) 681 WP_012692604.1 NUDIX hydrolase -
  DEIDE_RS03690 (Deide_06370) - 752064..754049 (-) 1986 WP_041227388.1 amylo-alpha-1,6-glucosidase -
  DEIDE_RS03695 (Deide_06380) infC 754223..754855 (+) 633 WP_012692606.1 translation initiation factor IF-3 -
  DEIDE_RS03700 (Deide_06390) - 754983..755228 (+) 246 WP_012692607.1 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21600.93 Da        Isoelectric Point: 6.3342

>NTDB_id=33726 DEIDE_RS03675 WP_012692602.1 750304..750900(-) (recR) [Deinococcus deserti VCD115]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLAGALLAAKRDLHTCPVCFNITDAERCDVCSDPSRDQN
LICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPEKLHIKPLLPRVQEGQEIILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALTGRQRVSK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=33726 DEIDE_RS03675 WP_012692602.1 750304..750900(-) (recR) [Deinococcus deserti VCD115]
ATGAAATACCCTCCTTCCCTGGTGTCGCTGATCCGCGAGCTGTCGCGCCTGCCCGGCATCGGGCCCAAAAGCGCGCAGCG
GCTGGCCTTTCACCTGTTCGAACAGCCGCGCGAGGACATCGAACGGCTGGCCGGCGCACTGCTCGCCGCCAAGCGCGACC
TGCATACCTGCCCGGTCTGTTTCAACATCACGGATGCCGAGCGCTGTGACGTCTGCAGCGATCCCAGCCGCGACCAGAAC
CTGATCTGTGTGGTCGAGGAACCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGCGGCCTGTACCACGTGCT
GCACGGTGTCCTGAGCCCCATGAACGGCGTTGGGCCTGAAAAGCTGCATATCAAGCCGCTGCTGCCCCGTGTTCAGGAAG
GTCAGGAAATTATTCTGGCCACCGGCACCACCGTCGAGGGCGACGCGACCGCGCTGTACCTGCAGCGCCTGCTGGAGCCA
CTGGGCGCTGTTGTCAGCCGTATCGCCTATGGTCTGCCGGTGGGCGGCGCGCTGGAATACGCCGATGAAGTCACGCTGGG
CCGTGCGCTTACCGGCCGGCAGCGCGTAAGCAAGTAA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1D0V5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.899

100

0.899

Multiple sequence alignment