Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DEIDE_RS03075 Genome accession   NC_012526
Coordinates   624226..624864 (+) Length   212 a.a.
NCBI ID   WP_049760433.1    Uniprot ID   C1D0K1
Organism   Deinococcus deserti VCD115     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619226..629864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS03040 - 620358..620597 (+) 240 WP_041227012.1 hypothetical protein -
  DEIDE_RS03050 (Deide_05330) gatC 621064..621354 (+) 291 WP_012692494.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DEIDE_RS03055 (Deide_05340) serS 621354..622631 (+) 1278 WP_012692495.1 serine--tRNA ligase -
  DEIDE_RS03060 (Deide_05350) - 622820..623344 (+) 525 WP_012692496.1 DinB family protein -
  DEIDE_RS03065 (Deide_05360) - 623341..623793 (+) 453 WP_012692497.1 hypothetical protein -
  DEIDE_RS03070 - 623908..624078 (+) 171 WP_162485388.1 hypothetical protein -
  DEIDE_RS03075 (Deide_05371) comF 624226..624864 (+) 639 WP_049760433.1 ComF family protein Machinery gene
  DEIDE_RS03080 (Deide_05380) - 624869..625435 (-) 567 WP_012692499.1 DUF1684 domain-containing protein -
  DEIDE_RS03085 (Deide_05390) - 625432..625638 (-) 207 WP_012692500.1 RNA-binding S4 domain-containing protein -
  DEIDE_RS03090 (Deide_05400) - 625726..626271 (-) 546 WP_012692501.1 hypothetical protein -
  DEIDE_RS03095 (Deide_05410) - 626268..626729 (-) 462 WP_012692502.1 hypothetical protein -
  DEIDE_RS03100 (Deide_05420) - 626726..627703 (-) 978 WP_012692503.1 Ig domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22858.42 Da        Isoelectric Point: 10.2486

>NTDB_id=33725 DEIDE_RS03075 WP_049760433.1 624226..624864(+) (comF) [Deinococcus deserti VCD115]
MALEWWTALARTLLPRSCPGCGQQLGPEAGLCSGCRAALKPQVQSHSPLSSRAEPHLVTLGAYRGPLRRSVRALKYSGAR
DLAGILGGALARGVPPEWRVEAVIPVPLHVSRQRERGFNQSELLACRLAHELGAVCVPKALMRGRQGLSQARQQGAQRQN
LHGHFQADLRNLPSGPVLLLDDVLTSGRTLLACRDALQEAGVGELYYAVVAR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=33725 DEIDE_RS03075 WP_049760433.1 624226..624864(+) (comF) [Deinococcus deserti VCD115]
ATGGCTTTGGAATGGTGGACAGCGCTGGCCCGGACGTTGTTGCCGCGCTCCTGCCCGGGATGCGGGCAGCAACTGGGCCC
GGAAGCCGGACTGTGTTCCGGGTGTCGCGCCGCCCTGAAACCTCAGGTTCAGTCTCATAGCCCCCTTAGCAGCCGCGCCG
AGCCGCATCTGGTCACGCTGGGGGCCTACCGGGGCCCGCTGCGACGGTCGGTGAGGGCGCTCAAGTACAGTGGCGCCCGC
GATCTGGCGGGCATACTCGGGGGTGCACTGGCACGGGGCGTGCCACCAGAGTGGCGAGTGGAGGCGGTAATTCCGGTCCC
CTTACACGTGTCACGGCAGCGTGAGCGGGGCTTTAACCAGTCCGAGCTGCTGGCCTGCAGGCTGGCACATGAACTGGGTG
CGGTCTGTGTCCCCAAAGCGCTCATGCGCGGCCGTCAGGGCCTGTCTCAGGCGCGTCAGCAGGGAGCGCAGCGGCAGAAC
CTTCACGGGCACTTTCAGGCCGATCTCCGGAACCTGCCTTCAGGCCCGGTTCTGCTGCTTGATGACGTGCTGACAAGTGG
GCGCACTCTACTGGCCTGCCGTGACGCTCTGCAGGAAGCTGGAGTGGGTGAGCTGTACTACGCCGTGGTGGCGCGCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(10-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1D0K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.951

96.698

0.599

Multiple sequence alignment