Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   EQH38_RS02810 Genome accession   NZ_CP035242
Coordinates   508354..509175 (+) Length   273 a.a.
NCBI ID   WP_078151625.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 503354..514175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS02785 (EQH38_02925) - 503709..504317 (+) 609 WP_000083614.1 hypothetical protein -
  EQH38_RS02790 (EQH38_02930) - 504310..504720 (+) 411 WP_000595762.1 hypothetical protein -
  EQH38_RS02795 (EQH38_02935) ply 504731..506146 (+) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  EQH38_RS02800 (EQH38_02945) - 507027..507743 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH38_RS02805 (EQH38_02955) - 507867..508338 (+) 472 Protein_538 MarR family winged helix-turn-helix transcriptional regulator -
  EQH38_RS02810 (EQH38_02960) rcrP 508354..509175 (+) 822 WP_078151625.1 ABC transporter permease Regulator
  EQH38_RS02815 (EQH38_02965) - 509230..510213 (+) 984 Protein_540 ATP-binding cassette domain-containing protein -
  EQH38_RS02820 (EQH38_02975) - 510279..510641 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  EQH38_RS02825 (EQH38_02980) - 510638..511141 (+) 504 WP_000800942.1 phosphatase PAP2 family protein -
  EQH38_RS02830 (EQH38_02985) - 511255..511701 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH38_RS02835 (EQH38_02990) - 511707..512381 (+) 675 WP_000725751.1 LiaF transmembrane domain-containing protein -
  EQH38_RS02840 (EQH38_02995) - 512542..512733 (+) 192 WP_000291826.1 cell wall-binding protein -
  EQH38_RS02850 (EQH38_03000) - 512790..512936 (-) 147 WP_000692801.1 hypothetical protein -
  EQH38_RS02855 (EQH38_03005) - 513030..513329 (+) 300 WP_001818001.1 DUF4651 domain-containing protein -
  EQH38_RS02860 (EQH38_03010) - 513326..513643 (+) 318 WP_000615775.1 thioredoxin family protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30688.34 Da        Isoelectric Point: 5.9257

>NTDB_id=337126 EQH38_RS02810 WP_078151625.1 508354..509175(+) (rcrP) [Streptococcus pneumoniae strain TVO_1901947]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQVTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLDFPKQSLIQGLIDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGTYVINDAAPIARLPFFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=337126 EQH38_RS02810 WP_078151625.1 508354..509175(+) (rcrP) [Streptococcus pneumoniae strain TVO_1901947]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGTAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTTTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGACTTTCCAAAACAGTCCTTGATTCAGGGGCTGATAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGACCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTTTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.491

100

0.59


Multiple sequence alignment