Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FZN31_RS01730 Genome accession   NZ_CP043414
Coordinates   381760..382524 (-) Length   254 a.a.
NCBI ID   WP_103253587.1    Uniprot ID   -
Organism   Escherichia coli strain EC42405     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 376760..387524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN31_RS01720 (FZN31_01820) nikR 380551..380952 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  FZN31_RS01725 (FZN31_01825) nikE 380957..381763 (-) 807 WP_105288265.1 nickel import ATP-binding protein NikE -
  FZN31_RS01730 (FZN31_01830) amiE 381760..382524 (-) 765 WP_103253587.1 nickel import ATP-binding protein NikD Regulator
  FZN31_RS01735 (FZN31_01835) nikC 382524..383357 (-) 834 WP_001008971.1 nickel ABC transporter permease subunit NikC -
  FZN31_RS01740 (FZN31_01840) nikB 383354..384298 (-) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  FZN31_RS01745 (FZN31_01845) nikA 384298..385872 (-) 1575 WP_105277432.1 nickel ABC transporter substrate-binding protein -
  FZN31_RS01750 (FZN31_01850) acpT 385983..386570 (-) 588 WP_032185350.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26839.43 Da        Isoelectric Point: 6.6882

>NTDB_id=336986 FZN31_RS01730 WP_103253587.1 381760..382524(-) (amiE) [Escherichia coli strain EC42405]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCQALGKPADDATLIAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=336986 FZN31_RS01730 WP_103253587.1 381760..382524(-) (amiE) [Escherichia coli strain EC42405]
ATGCCGCAACAGATTGAATTACGTAATATCGCGCTACAGGCCGCGCAACCGCTGGTACACGGCGTATCGTTAACCCTGCA
ACGCGGACGCGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGTGCCGCGACGCTGGGCATTCTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGTATCAAA
ATTGCCACTATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACGCACGCGCGGGAAACTTGCCA
GGCACTGGGGAAACCCGCCGATGACGCCACGCTTATTGCCGCTATAGAAGCGGTAGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTATACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCAGTGCTATGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTTGATGTAGTAGCGCAAGCACGCATTCTGGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTAGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCGCACGGTAAGATTGTCGAACAGGGCGATGTCGAAACACTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCTGCTCACCTCGCCCTTTATGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment