Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FY406_RS08930 Genome accession   NZ_CP043405
Coordinates   1790697..1792430 (-) Length   577 a.a.
NCBI ID   WP_003088339.1    Uniprot ID   A0ABP2QY44
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785697..1797430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08910 (FY406_08910) - 1786904..1787590 (+) 687 WP_003088331.1 phosphopantothenate--cysteine ligase -
  FY406_RS08915 (FY406_08915) coaC 1787583..1788122 (+) 540 WP_003088333.1 phosphopantothenoylcysteine decarboxylase -
  FY406_RS08920 (FY406_08920) - 1788197..1788769 (+) 573 WP_003088335.1 ECF transporter S component -
  FY406_RS08925 (FY406_08925) - 1788864..1790579 (+) 1716 WP_003088338.1 phospho-sugar mutase -
  FY406_RS08930 (FY406_08930) rcrQ 1790697..1792430 (-) 1734 WP_003088339.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08935 (FY406_08935) - 1792427..1794160 (-) 1734 WP_003088342.1 ABC transporter ATP-binding protein -
  FY406_RS08940 (FY406_08940) - 1794178..1794783 (-) 606 WP_003088344.1 lysozyme family protein -
  FY406_RS08945 (FY406_08945) - 1794785..1795762 (-) 978 WP_003088346.1 nucleoid-associated protein -
  FY406_RS08950 (FY406_08950) glyA 1795759..1797021 (-) 1263 WP_003088348.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64673.00 Da        Isoelectric Point: 8.8368

>NTDB_id=336884 FY406_RS08930 WP_003088339.1 1790697..1792430(-) (rcrQ) [Streptococcus ratti strain ATCC 31377]
MKARNNRDTLKRLTADMLQQKLLVGGALLGTFIQVGLTVYLPVLIGRAVDAVVAKNVHELLPIILGKMILVVAFNTLIQW
FNPLIYNRLVFAYSQKLRQELIEKLYRLPLSYLDSHSAGDLVSRMTTDVEQLSNGLLMVFNQFFVGILTILFTILTMAEL
DLLMMVLVLALTPLSLFVARFIAQKSYRLYQSQARARGSFTQHIEESLRQESLIQTFNAQEQFIDTFDHLNNTYARYSQG
AIFYSSTVNPATRFINALIYALLAGIGALRIISGSFTVGQLTTFLNYVTQYTKPFNDISSVLSELQSALACAERLYMILD
EEEARDEGRQELESRSVKGAITFDNISFGYSSRQTLIKNLSLTIPQGSKVAIVGPTGAGKSTLINLLMRFYELQSGQILL
DGVPITAYSKASYRQQIGMVLQETWLKTATVLENIAFGWPQASREQVIAAAKAANADFFIKQLPQGYDTYLADAGESLSQ
GQRQLLTIARIFVHIPKILILDEATSSIDTRTEILIQEAFEKLMKNRTSFIIAHRLSTIQSADLILVMVDGNIVEQGNHK
DLMQKKGVYYQMQTAQN

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=336884 FY406_RS08930 WP_003088339.1 1790697..1792430(-) (rcrQ) [Streptococcus ratti strain ATCC 31377]
ATGAAAGCAAGAAACAACAGAGATACTCTCAAACGTTTAACAGCCGACATGCTGCAGCAAAAACTCCTAGTTGGCGGCGC
CTTGCTTGGAACCTTTATCCAAGTTGGTTTAACCGTTTATCTGCCGGTTTTAATCGGCCGGGCAGTTGATGCGGTAGTTG
CTAAAAATGTTCATGAGCTTTTGCCGATAATTCTAGGCAAGATGATTTTGGTTGTTGCTTTTAATACGTTGATTCAGTGG
TTCAATCCTCTCATTTACAATCGGCTGGTCTTTGCTTACAGTCAAAAATTGCGTCAAGAACTGATCGAAAAGCTCTACCG
TCTGCCTTTGTCCTATCTGGACAGCCACTCTGCCGGTGACTTGGTCAGCCGAATGACAACAGATGTTGAGCAGCTTTCAA
ATGGCTTACTGATGGTTTTTAATCAGTTTTTTGTAGGGATTTTGACGATTCTGTTCACCATTTTGACTATGGCTGAGCTG
GATCTTTTAATGATGGTTCTGGTATTGGCACTGACGCCGCTTTCTTTATTCGTTGCTCGTTTTATCGCTCAAAAAAGCTA
TCGTCTCTATCAGAGCCAAGCAAGGGCCAGAGGTTCTTTTACGCAGCACATTGAAGAAAGTCTAAGACAGGAAAGTCTCA
TTCAGACCTTTAATGCTCAAGAACAGTTCATTGATACCTTTGATCATCTTAATAATACATATGCCAGATACTCACAGGGT
GCCATCTTTTATTCGTCAACAGTCAATCCGGCTACCCGCTTTATTAATGCCTTGATTTATGCATTGTTAGCCGGTATCGG
AGCTCTGCGGATTATTAGTGGGAGTTTCACTGTCGGACAGCTAACTACTTTTTTAAATTATGTCACTCAATATACCAAAC
CTTTTAATGATATTTCATCTGTACTGTCAGAATTGCAAAGCGCTCTAGCCTGTGCCGAACGTCTGTACATGATACTGGAC
GAAGAAGAAGCTAGAGATGAAGGGCGACAAGAATTGGAAAGTCGATCGGTCAAAGGAGCTATCACTTTTGATAATATCAG
CTTTGGATACAGTAGCAGGCAAACCTTGATTAAAAACTTGTCTCTTACTATTCCTCAAGGTTCCAAAGTGGCAATCGTTG
GTCCTACAGGAGCCGGTAAATCAACCTTGATTAATTTGCTGATGCGTTTTTATGAATTGCAAAGCGGTCAGATTCTTTTA
GATGGGGTACCAATAACGGCTTATAGTAAAGCTTCTTACCGTCAGCAGATTGGCATGGTTCTGCAAGAAACCTGGCTGAA
AACGGCTACTGTCCTTGAAAATATTGCTTTTGGCTGGCCTCAAGCAAGCCGTGAACAGGTTATTGCAGCGGCAAAAGCAG
CCAATGCCGACTTCTTTATCAAGCAGCTTCCTCAAGGCTATGATACCTATCTGGCGGATGCCGGTGAATCACTGTCACAG
GGACAGCGGCAGCTTTTGACCATAGCACGGATTTTTGTACATATTCCTAAAATCCTGATTTTAGATGAAGCAACCTCATC
TATTGATACGCGTACAGAAATTTTAATCCAAGAAGCCTTTGAAAAACTGATGAAAAATCGAACTAGCTTTATCATTGCCC
ATCGATTATCAACTATTCAAAGTGCAGACCTTATCTTAGTTATGGTGGATGGCAATATTGTTGAACAAGGCAACCATAAA
GATTTAATGCAGAAGAAGGGTGTCTATTATCAGATGCAGACGGCACAAAATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(27-294)

ABC transporter (ABC_tran)

(358-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.261

98.44

0.386

Multiple sequence alignment