Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BBR47_RS09770 Genome accession   NC_012491
Coordinates   1993012..1995273 (+) Length   753 a.a.
NCBI ID   WP_012685611.1    Uniprot ID   C0ZAR4
Organism   Brevibacillus brevis NBRC 100599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988012..2000273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS31210 - 1989046..1989219 (-) 174 WP_016739245.1 hypothetical protein -
  BBR47_RS09755 (BBR47_18930) cymR 1989317..1989736 (+) 420 WP_012685608.1 cysteine metabolism transcriptional regulator CymR -
  BBR47_RS09760 (BBR47_18940) - 1989947..1991092 (+) 1146 WP_012685609.1 cysteine desulfurase family protein -
  BBR47_RS09765 (BBR47_18950) - 1991265..1992929 (+) 1665 WP_012685610.1 methyl-accepting chemotaxis protein -
  BBR47_RS09770 (BBR47_18960) recD2 1993012..1995273 (+) 2262 WP_012685611.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BBR47_RS09775 (BBR47_18970) - 1995348..1995827 (+) 480 WP_012685612.1 PRC-barrel domain-containing protein -
  BBR47_RS09780 (BBR47_18980) - 1995862..1996068 (+) 207 WP_012685613.1 hypothetical protein -
  BBR47_RS09785 (BBR47_18990) - 1996096..1996290 (+) 195 WP_229088206.1 hypothetical protein -
  BBR47_RS09790 (BBR47_19000) - 1996404..1997090 (-) 687 WP_012685615.1 TerC family protein -
  BBR47_RS09795 (BBR47_19010) - 1997469..1998533 (+) 1065 WP_012685616.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85208.43 Da        Isoelectric Point: 5.0670

>NTDB_id=33686 BBR47_RS09770 WP_012685611.1 1993012..1995273(+) (recD2) [Brevibacillus brevis NBRC 100599]
MDEQQSISLFAETYIRGFVSQEIFYNEETWYGVIRLKIEETTESIKESEVIIVGNFPRPHPDELYTFYGEWKTHARFGQQ
YVAKRYERETPKTLAGVERYLASGLFQGIGKKMAKRIVEQLGVDALSIIADFPERLAEVPGISEQRAKTIYDSVVEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKIETMTVLKEEPYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFMLQEAS
YSEGHVYLPVEELCEKTLRLLEECGGHVFSGDDIQLAVEALFVSSKIAWEDERVYLPSLFFAELGLAKRLRHFASRDEFG
TFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPGTGKTTVIRGICRVFSQLHGLSLDLKKYNEENPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFEHDAEHPIRGRLLIVDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLLDMIRSGLLPLVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTSLPQEVPEAVKQIC
FGAVKKGYTAKDVQVLAPIYKGNAGVNRLNEELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVESDEEGVRYSYLEERLKQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=33686 BBR47_RS09770 WP_012685611.1 1993012..1995273(+) (recD2) [Brevibacillus brevis NBRC 100599]
ATGGATGAGCAGCAGTCAATCTCGCTGTTTGCGGAAACCTACATTCGAGGATTTGTTTCTCAAGAAATTTTTTACAATGA
AGAAACCTGGTACGGAGTTATCCGTCTTAAGATAGAAGAGACTACCGAATCGATTAAAGAATCGGAGGTCATTATTGTCG
GTAATTTTCCTCGCCCGCATCCAGATGAGCTGTACACCTTTTACGGTGAATGGAAAACACATGCTCGTTTTGGACAGCAG
TACGTAGCAAAACGCTATGAACGTGAAACGCCGAAAACATTGGCAGGGGTAGAGCGCTACTTAGCCAGTGGCTTGTTTCA
AGGGATCGGAAAGAAGATGGCCAAACGAATTGTCGAGCAGCTCGGGGTAGATGCACTGTCGATTATCGCAGACTTCCCAG
AGCGATTGGCTGAGGTACCAGGCATTTCTGAACAACGTGCCAAAACGATCTATGATTCCGTGGTCGAGCATCGCTCCTTG
GAAAGTGCCATGGTTTTCTTGTACGACTTCGGCATTGGTGTGAACATGGCACTGCGTATTTATCAGACCTACAAGATAGA
AACGATGACAGTGCTGAAGGAAGAGCCTTACCGTTTGATTGAGGATGTCGTAGGAATCGGCTTTAAGCGAGCAGATGACA
TTGCACGAGCAACTGGGATTGCTGCTTCCTCAGAAGAACGTGTGAAGGCGGCGGCTCTCTTTATGTTGCAGGAGGCATCG
TATTCGGAAGGGCATGTTTATTTGCCTGTGGAGGAGCTTTGTGAAAAAACACTGCGCCTTCTCGAAGAGTGCGGGGGGCA
CGTCTTTTCCGGAGACGATATTCAACTGGCAGTGGAAGCCCTGTTCGTGTCGAGCAAAATTGCCTGGGAAGATGAGCGGG
TTTATTTGCCCTCGCTGTTTTTTGCCGAGCTTGGTCTAGCCAAAAGACTGCGTCACTTCGCATCACGGGATGAATTCGGT
ACGTTTCCGACATCGGAATTTTACCGTGCGTTAGGGGCGGTCGAGGATGAGCTGGGGATTACGTATGCCCAGACGCAGCG
TGATGCCATTGAACAGGCGATCAAAGCAGGTTTGATGCTGTTGACAGGGGGACCTGGTACGGGGAAAACGACAGTCATTC
GTGGGATATGTCGTGTCTTTTCTCAGCTTCATGGATTGTCGCTGGACTTGAAAAAATACAACGAAGAAAATCCATTCCCG
ATCGTTCTTGTGGCTCCTACCGGACGTGCAGCAAAACGTATGACAGAGACTACGGGTTTACCTGCAATGACCATCCATCG
CTTGCTCGGTTACAAAGGGGAGAGCTTTGAGCATGACGCGGAGCACCCAATCCGTGGACGGCTATTAATTGTGGATGAAA
TGTCCATGGTCGATATCTGGCTTGCCAATCAATTGTTTCGTGCGGTTCCAGACGACATGCAGATCATCATGGTAGGTGAC
CCTGACCAGTTGCCTTCTGTAGGACCGGGCAACGTTCTGCTGGATATGATCCGATCTGGATTGCTTCCGTTGGTACAGCT
GACAGAAATTTATCGGCAAGCTGAAGAGTCTACCATTATTCGGTTGGCCCATGATGTACGCAAGGGGAATGTACCGGCAG
ATTTGCTTCACACCACCCCGGATCGGCGATTCTTCACAAGTTTGCCACAAGAAGTTCCGGAAGCAGTGAAACAAATTTGC
TTCGGAGCCGTAAAAAAAGGATATACGGCAAAAGATGTTCAGGTATTAGCCCCTATCTATAAAGGTAATGCCGGTGTGAA
CCGGTTGAATGAAGAATTGCAGGAGCTGTTTAATCCGAAAACGCCGCAAAAGCGTGAAGTTACTTTTGGAGAGACGACGT
TCCGTACAGGAGACAAGGTTCTGCAATTGGTGAACAATGCTGAAGAACAGGTGTTTAACGGTGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAATGAAAATGCGGAGAACCAGGAGATGCTGGTCGCTGCCTTTGATAACAGGGAAGTGGTGTACAA
GCGTTCGGATTACCATCAGCTGACGCTTGCCTACTGCTGCTCGGTTCATAAGTCTCAAGGTAGTGAATTTCCGATTGTGA
TCATGCCGTTTGTCAAAAGTTACTACCGTATGCTCAGACGTAAGTTGGTCTATACCGGGATCACCCGGAGCAAATCATTC
CTCATCATGTGTGGAGAGCCGGATGCGTTCCGTGCTGCTGTAGAGTCTGATGAGGAAGGGGTACGGTACAGTTATTTGGA
GGAACGGCTAAAGCAAGAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

AAA domain (AAA_30)

(342-535)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)

Helix-hairpin-helix domain (HHH_5)

(107-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0ZAR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.064

99.336

0.487

Multiple sequence alignment