Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FY406_RS04765 Genome accession   NZ_CP043405
Coordinates   977577..978362 (+) Length   261 a.a.
NCBI ID   WP_003086579.1    Uniprot ID   A0ABP2R0S0
Organism   Streptococcus ratti strain ATCC 31377     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 972577..983362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04745 (FY406_04745) - 973340..974722 (+) 1383 WP_003086590.1 Cof-type HAD-IIB family hydrolase -
  FY406_RS04750 (FY406_04750) - 974948..975397 (-) 450 WP_003086587.1 universal stress protein -
  FY406_RS04755 (FY406_04755) - 975495..976031 (-) 537 WP_003086585.1 biotin transporter BioY -
  FY406_RS04760 (FY406_04760) - 976254..977468 (+) 1215 WP_003086582.1 pyridoxal phosphate-dependent aminotransferase -
  FY406_RS04765 (FY406_04765) codY 977577..978362 (+) 786 WP_003086579.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FY406_RS04770 (FY406_04770) - 978362..978913 (+) 552 WP_003086575.1 cysteine hydrolase family protein -
  FY406_RS04775 (FY406_04775) aspS 979175..980926 (+) 1752 WP_003086573.1 aspartate--tRNA ligase -
  FY406_RS04780 (FY406_04780) gatC 981036..981338 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FY406_RS04785 (FY406_04785) gatA 981338..982804 (+) 1467 WP_003086535.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28956.11 Da        Isoelectric Point: 4.5157

>NTDB_id=336850 FY406_RS04765 WP_003086579.1 977577..978362(+) (codY) [Streptococcus ratti strain ATCC 31377]
MANLLSKTRRITSILQRSVESLQSDLPYDTIADQLAEIIDCNACIIDGSGKILGYAMKYKTNTDRVEEFFQAKKLPDDYV
KSASRIYDTEANLSVENDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFNDDDLILIEIASTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILNELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKDYS

Nucleotide


Download         Length: 786 bp        

>NTDB_id=336850 FY406_RS04765 WP_003086579.1 977577..978362(+) (codY) [Streptococcus ratti strain ATCC 31377]
ATGGCTAATTTATTATCGAAAACGCGGCGTATTACCTCTATTTTGCAACGCTCGGTTGAAAGTCTTCAAAGTGATTTGCC
CTACGATACAATTGCGGATCAGTTGGCTGAAATTATTGACTGCAATGCCTGTATTATTGATGGCAGCGGTAAAATCCTCG
GTTATGCAATGAAGTATAAGACCAACACAGACCGAGTTGAAGAATTTTTCCAAGCTAAAAAGCTGCCTGATGACTATGTC
AAATCAGCCAGCCGGATTTATGATACAGAGGCTAATTTGTCTGTTGAAAATGATTTAACCATCTTTCCGGTTGAATCAAA
GGATATTTATCCGGACGGTTTGACAACGATTGCTCCGATTTATGGCGGCGGCATGCGGCTGGGCTCTTTGATTATCTGGC
GCAATGACAAGGAGTTTAATGATGACGATTTGATTTTGATTGAAATTGCCTCTACAGTTGTAGGGATTCAGCTCTTGAAT
TTGCAGACAGAAAATCTGGAAGAAACCATTCGCAAGCAAACAGCAATCAATATGGCAATCAATACCTTGTCTTATTCAGA
AATGAAGGCTGTTGCAGCCATTCTCAATGAACTTGACGGCAATGAAGGGCGCCTGACTGCTTCGGTCATTGCAGATCGTA
TCGGCATTACACGCAGCGTCATCGTCAATGCCCTTCGAAAACTCGAAAGTGCGGGGATCATTGAAAGCCGATCGCTAGGT
ATGAAGGGGACTTATTTAAAAGTCATCAATGAAGGTATTTTTGATAAGCTGAAGGACTATAGCTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

48.828

98.084

0.479

Multiple sequence alignment