Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   FY406_RS02580 Genome accession   NZ_CP043405
Coordinates   544433..545767 (-) Length   444 a.a.
NCBI ID   WP_003090015.1    Uniprot ID   A0ABN0GWL0
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539433..550767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS02550 (FY406_02550) - 539628..540809 (+) 1182 WP_003090004.1 macrolide family glycosyltransferase -
  FY406_RS02555 (FY406_02555) - 540825..541640 (+) 816 WP_003090006.1 tyrosine-protein phosphatase -
  FY406_RS02560 (FY406_02560) - 541756..542385 (-) 630 WP_003090008.1 hypothetical protein -
  FY406_RS02565 (FY406_02565) - 542444..543208 (-) 765 WP_003090010.1 hypothetical protein -
  FY406_RS02570 (FY406_02570) - 543223..543546 (-) 324 WP_174267043.1 hypothetical protein -
  FY406_RS02575 (FY406_02575) - 543696..544265 (-) 570 WP_003090013.1 TetR/AcrR family transcriptional regulator -
  FY406_RS02580 (FY406_02580) rarA 544433..545767 (-) 1335 WP_003090015.1 replication-associated recombination protein A Machinery gene
  FY406_RS02585 (FY406_02585) - 546235..547386 (+) 1152 WP_003090017.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  FY406_RS02590 (FY406_02590) - 547383..548015 (+) 633 WP_003090019.1 ABC transporter permease -
  FY406_RS02595 (FY406_02595) - 548017..548946 (+) 930 WP_003090020.1 osmoprotectant ABC transporter substrate-binding protein -
  FY406_RS02600 (FY406_02600) - 548949..549614 (+) 666 WP_003090023.1 ABC transporter permease -
  FY406_RS02605 (FY406_02605) - 549756..550334 (-) 579 WP_037611274.1 DNA-3-methyladenine glycosylase -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 50179.62 Da        Isoelectric Point: 7.8728

>NTDB_id=336816 FY406_RS02580 WP_003090015.1 544433..545767(-) (rarA) [Streptococcus ratti strain ATCC 31377]
MPQTSLFDQDMDMAAPLASRVRPTNLDDFVGQKHLVGEGKFLREMIDKDQVSSMIFWGPPGVGKTTLAEIIAKKTKSKFI
TFSAVLNGIKEIRKIMNEAEENRQLGERTIVFIDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNSALLSRTRV
FVLKQLSEGDITDLLKRVLKSSRAFPDLELTVSDDLLKQIAIYSNGDARTALNTLEMLVINSDIKDKQVTISGDLLEELL
DKKTAYYDKAGEEHYNIISALHKSMRNSDVDSAIYWLGRMIDGGEDPLYIARRLIRFASEDIGLADNSALNLAVNVFQAC
RYIGLPECDVHLTQCVIYLSLAPKSNAVYKARTAVQKDIKQTIDEPVPLHLRNATTKLMKKVGYGKGYQLAHFYKDKLTA
MPTRPESVANHTYYKPTEEGNEARIKQRLNYIKGWKEKHHMDKD

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=336816 FY406_RS02580 WP_003090015.1 544433..545767(-) (rarA) [Streptococcus ratti strain ATCC 31377]
GTGCCGCAAACATCTTTATTTGATCAAGATATGGATATGGCAGCCCCCCTAGCCAGCCGTGTGAGACCGACCAATCTGGA
TGATTTTGTTGGTCAAAAGCATTTGGTGGGGGAAGGAAAGTTTTTGCGGGAAATGATTGATAAGGATCAGGTGTCATCTA
TGATTTTTTGGGGACCGCCCGGAGTGGGAAAGACGACGCTTGCTGAAATTATTGCCAAAAAGACCAAATCAAAGTTTATT
ACATTCAGCGCGGTGTTAAATGGGATCAAAGAAATCCGTAAAATTATGAACGAAGCGGAGGAAAACCGTCAGCTGGGGGA
GCGTACCATTGTTTTTATTGATGAAATTCATCGTTTTAACAAGGCTCAGCAGGATGCTTTTTTGCCTTATGTCGAAAAGG
GCAGTATCATTCTGATTGGGGCGACAACTGAAAACCCTTCTTTTGAGGTTAATTCAGCCCTGTTGTCACGCACTCGTGTT
TTTGTCCTCAAACAGTTGAGTGAAGGTGATATTACAGATTTGCTCAAACGTGTTCTCAAATCCTCGCGGGCCTTTCCGGA
TTTAGAGCTTACTGTCAGCGATGATTTGCTGAAACAAATTGCCATTTATTCTAACGGGGACGCAAGAACGGCTCTCAATA
CGCTGGAAATGCTGGTGATTAACAGCGATATAAAAGATAAACAAGTGACTATTTCAGGCGATCTTTTAGAAGAGCTGCTG
GATAAGAAAACGGCTTACTATGATAAGGCTGGCGAAGAGCATTATAATATTATCTCTGCCCTTCATAAGTCTATGCGCAA
CAGCGATGTGGACTCGGCCATTTACTGGCTGGGACGGATGATTGACGGCGGTGAAGATCCTCTTTATATTGCCAGGCGCT
TGATTCGTTTTGCCAGCGAAGATATCGGCCTAGCGGACAACAGTGCTCTTAATCTGGCAGTCAATGTCTTTCAGGCTTGC
CGCTATATCGGTCTGCCCGAGTGTGATGTGCATTTAACCCAGTGTGTGATTTATTTATCCTTAGCACCCAAATCCAATGC
TGTTTATAAGGCAAGAACGGCTGTGCAAAAAGATATCAAGCAGACCATTGACGAACCTGTACCTCTGCACCTGCGCAATG
CGACTACCAAACTCATGAAAAAAGTCGGCTACGGCAAAGGCTACCAGCTGGCGCATTTTTATAAAGATAAGCTGACAGCA
ATGCCGACACGCCCTGAAAGTGTAGCCAATCATACTTACTACAAACCAACCGAAGAAGGCAATGAAGCCAGAATAAAACA
AAGGCTCAATTATATTAAAGGGTGGAAAGAAAAACATCATATGGATAAAGACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(54-161)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-432)

AAA C-terminal domain (AAA_assoc_2)

(189-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.036

93.468

0.365

Multiple sequence alignment