Detailed information NTG0336525

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: EQZ20_RS09420
• Genome accession: NZ_CP035232
• Coordinates: 1843354..1844133 (+)
• Length: 259 a.a.
• NCBI ID: WP_006638180.1
• Uniprot ID: A0A6I7F231
• Organism: Bacillus glycinifermentans strain SRCM103574
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1838354..1849133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQZ20_RS09400 (EQZ20_09400)	trmFO	1839055..1840359 (+)	1305	WP_046128971.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
EQZ20_RS09405 (EQZ20_09405)	xerC	1840426..1841340 (+)	915	WP_046128970.1	tyrosine recombinase XerC	-
EQZ20_RS09410 (EQZ20_09410)	hslV	1841354..1841896 (+)	543	WP_046128969.1	ATP-dependent protease subunit HslV	-
EQZ20_RS09415 (EQZ20_09415)	hslU	1841904..1843316 (+)	1413	WP_269081991.1	HslU--HslV peptidase ATPase subunit	-
EQZ20_RS09420 (EQZ20_09420)	codY	1843354..1844133 (+)	780	WP_006638180.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
EQZ20_RS09425 (EQZ20_09425)	flgB	1844475..1844864 (+)	390	WP_046128967.1	flagellar basal body rod protein FlgB	-
EQZ20_RS09430 (EQZ20_09430)	flgC	1844864..1845316 (+)	453	WP_046128966.1	flagellar basal body rod protein FlgC	-
EQZ20_RS09435 (EQZ20_09435)	fliE	1845329..1845646 (+)	318	WP_065894398.1	flagellar hook-basal body complex protein FliE	-
EQZ20_RS09440 (EQZ20_09440)	fliF	1845697..1847298 (+)	1602	WP_046128964.1	flagellar basal-body MS-ring/collar protein FliF	-
EQZ20_RS09445 (EQZ20_09445)	fliG	1847312..1848328 (+)	1017	WP_046128963.1	flagellar motor switch protein FliG	-
EQZ20_RS09450 (EQZ20_09450)	fliH	1848312..1849079 (+)	768	WP_052948478.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29087.45 Da
• Isoelectric Point: 4.8196

>NTDB_id=336525 EQZ20_RS09420 WP_006638180.1 1843354..1844133(+) (codY) [Bacillus glycinifermentans strain SRCM103574]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=336525 EQZ20_RS09420 WP_006638180.1 1843354..1844133(+) (codY) [Bacillus glycinifermentans strain SRCM103574]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTTCGCGATGTAATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAACTTCTCGGCTTCTCTATCA
ACCAGCAGATCGAAAACGACCGGATGAAAAAAATGCTTGAAGAACGCCAGTTCCCTGAGGATTACACAAAAAGCCTGTTC
AACATTCCGGAAACATCATCAAACCTCGACATTAACAGCGAATACACGGCGTTCCCTGTCGAAAACCGCGATCTTTTCCA
AGCAGGGTTGACAACGATCGTACCGATCATCGGCGGAGGTGAAAGACTCGGAACATTGATTCTTTCCCGTCTTCAGGAAA
AATTTGAAGATGATGATCTGATCCTTGCCGAATATGGCGCAACTGTCGTCGGAATGGAGATTCTCAGAGAGAAAGCCGAA
GAAATCGAAGAGGAAGCCCGCAGCAAGGCTGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCGAT
TGAACATATCTTCGAGGAGCTCGATGGGAACGAAGGCCTGCTCGTTGCAAGTAAAATTGCAGACCGCGTCGGCATTACGC
GCTCGGTTATCGTAAATGCGCTGAGAAAACTCGAAAGCGCAGGCGTTATTGAGTCCCGCTCATTAGGGATGAAAGGCACA
TACATTAAAGTGCTGAACAACAAGTTCCTGATGGAGCTTGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A6I7F231

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.981	100	0.95
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467