Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EQY76_RS08760 Genome accession   NZ_CP035230
Coordinates   1661902..1662681 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103551     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656902..1667681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY76_RS08740 (EQY76_08740) trmFO 1657595..1658902 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQY76_RS08745 (EQY76_08745) xerC 1658970..1659884 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  EQY76_RS08750 (EQY76_08750) clpQ 1659897..1660442 (+) 546 WP_046160401.1 ATP-dependent protease subunit ClpQ -
  EQY76_RS08755 (EQY76_08755) hslU 1660450..1661862 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  EQY76_RS08760 (EQY76_08760) codY 1661902..1662681 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EQY76_RS08765 (EQY76_08765) flgB 1663061..1663450 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  EQY76_RS08770 (EQY76_08770) flgC 1663450..1663902 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  EQY76_RS08775 (EQY76_08775) fliE 1663913..1664233 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  EQY76_RS08780 (EQY76_08780) fliF 1664279..1665889 (+) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  EQY76_RS08785 (EQY76_08785) fliG 1665902..1666918 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  EQY76_RS08790 (EQY76_08790) fliH 1666911..1667663 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=336372 EQY76_RS08760 WP_003220850.1 1661902..1662681(+) (codY) [Bacillus subtilis strain SRCM103551]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=336372 EQY76_RS08760 WP_003220850.1 1661902..1662681(+) (codY) [Bacillus subtilis strain SRCM103551]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCAGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment