Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EQW70_RS09100 Genome accession   NZ_CP035226
Coordinates   1716587..1717366 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103517     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711587..1722366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS09080 (EQW70_09080) trmFO 1712280..1713587 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQW70_RS09085 (EQW70_09085) xerC 1713655..1714569 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  EQW70_RS09090 (EQW70_09090) clpQ 1714582..1715127 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  EQW70_RS09095 (EQW70_09095) hslU 1715135..1716547 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  EQW70_RS09100 (EQW70_09100) codY 1716587..1717366 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EQW70_RS09105 (EQW70_09105) flgB 1717746..1718135 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  EQW70_RS09110 (EQW70_09110) flgC 1718135..1718587 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  EQW70_RS09115 (EQW70_09115) fliE 1718598..1718918 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  EQW70_RS09120 (EQW70_09120) fliF 1718964..1720574 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  EQW70_RS09125 (EQW70_09125) fliG 1720587..1721603 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  EQW70_RS09130 (EQW70_09130) fliH 1721596..1722348 (+) 753 WP_031314968.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=336213 EQW70_RS09100 WP_003220850.1 1716587..1717366(+) (codY) [Bacillus subtilis strain SRCM103517]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=336213 EQW70_RS09100 WP_003220850.1 1716587..1717366(+) (codY) [Bacillus subtilis strain SRCM103517]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAATTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment