Detailed information NTG0335817

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: EQJ69_RS09395
• Genome accession: NZ_CP035188
• Coordinates: 1821177..1821956 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain SRCM103914
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1816177..1826956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQJ69_RS09375 (EQJ69_09375)	trmFO	1816874..1818178 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
EQJ69_RS09380 (EQJ69_09380)	xerC	1818245..1819159 (+)	915	WP_011197974.1	tyrosine recombinase XerC	-
EQJ69_RS09385 (EQJ69_09385)	hslV	1819173..1819718 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
EQJ69_RS09390 (EQJ69_09390)	hslU	1819726..1821138 (+)	1413	WP_254926368.1	HslU--HslV peptidase ATPase subunit	-
EQJ69_RS09395 (EQJ69_09395)	codY	1821177..1821956 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
EQJ69_RS09400 (EQJ69_09400)	flgB	1822310..1822699 (+)	390	WP_016886439.1	flagellar basal body rod protein FlgB	-
EQJ69_RS09405 (EQJ69_09405)	flgC	1822699..1823151 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
EQJ69_RS09410 (EQJ69_09410)	fliE	1823165..1823482 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
EQJ69_RS09415 (EQJ69_09415)	fliF	1823533..1825134 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
EQJ69_RS09420 (EQJ69_09420)	fliG	1825148..1826164 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
EQJ69_RS09425 (EQJ69_09425)	fliH	1826148..1826915 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=335817 EQJ69_RS09395 WP_003181756.1 1821177..1821956(+) (codY) [Bacillus licheniformis strain SRCM103914]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=335817 EQJ69_RS09395 WP_003181756.1 1821177..1821956(+) (codY) [Bacillus licheniformis strain SRCM103914]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467