Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FYA02_RS13915 Genome accession   NZ_CP043217
Coordinates   2748255..2749019 (+) Length   254 a.a.
NCBI ID   WP_001136229.1    Uniprot ID   B7L5T2
Organism   Escherichia coli O80:H26 strain EC-107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2743255..2754019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA02_RS13895 (FYA02_13895) acpT 2744209..2744796 (+) 588 WP_000285791.1 4'-phosphopantetheinyl transferase AcpT -
  FYA02_RS13900 (FYA02_13900) nikA 2744907..2746481 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  FYA02_RS13905 (FYA02_13905) nikB 2746481..2747425 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  FYA02_RS13910 (FYA02_13910) nikC 2747422..2748255 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  FYA02_RS13915 (FYA02_13915) amiE 2748255..2749019 (+) 765 WP_001136229.1 nickel import ATP-binding protein NikD Regulator
  FYA02_RS13920 (FYA02_13920) nikE 2749016..2749822 (+) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  FYA02_RS13925 (FYA02_13925) nikR 2749828..2750229 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.38 Da        Isoelectric Point: 6.3761

>NTDB_id=335800 FYA02_RS13915 WP_001136229.1 2748255..2749019(+) (amiE) [Escherichia coli O80:H26 strain EC-107]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=335800 FYA02_RS13915 WP_001136229.1 2748255..2749019(+) (amiE) [Escherichia coli O80:H26 strain EC-107]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L5T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398