Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EQI87_RS09125 Genome accession   NZ_CP035166
Coordinates   1705901..1706680 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103971     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700901..1711680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS09105 (EQI87_09105) trmFO 1701594..1702901 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQI87_RS09110 (EQI87_09110) xerC 1702969..1703883 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  EQI87_RS09115 (EQI87_09115) clpQ 1703896..1704441 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  EQI87_RS09120 (EQI87_09120) hslU 1704449..1705861 (+) 1413 WP_257726424.1 HslU--HslV peptidase ATPase subunit -
  EQI87_RS09125 (EQI87_09125) codY 1705901..1706680 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EQI87_RS09130 (EQI87_09130) flgB 1707060..1707449 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  EQI87_RS09135 (EQI87_09135) flgC 1707449..1707901 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  EQI87_RS09140 (EQI87_09140) fliE 1707912..1708232 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  EQI87_RS09145 (EQI87_09145) fliF 1708278..1709888 (+) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  EQI87_RS09150 (EQI87_09150) fliG 1709901..1710917 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  EQI87_RS09155 (EQI87_09155) fliH 1710910..1711662 (+) 753 WP_038430009.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=335356 EQI87_RS09125 WP_003220850.1 1705901..1706680(+) (codY) [Bacillus subtilis strain SRCM103971]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=335356 EQI87_RS09125 WP_003220850.1 1705901..1706680(+) (codY) [Bacillus subtilis strain SRCM103971]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment