Detailed information NTG0033524

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SEQ_RS05435
• Genome accession: NC_012471
• Coordinates: 1099950..1101179 (+)
• Length: 409 a.a.
• NCBI ID: WP_012679520.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi 4047
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1094950..1106179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SEQ_RS05410 (SEQ_1108)	-	1095677..1096960 (-)	1284	WP_042357442.1	hydroxymethylglutaryl-CoA reductase, degradative	-
SEQ_RS05415 (SEQ_1109)	-	1096947..1098122 (-)	1176	WP_012679517.1	hydroxymethylglutaryl-CoA synthase	-
SEQ_RS05420 (SEQ_1110)	-	1098307..1099146 (+)	840	WP_012679518.1	thymidylate synthase	-
SEQ_RS05425 (SEQ_1111)	-	1099227..1099724 (+)	498	WP_012679519.1	dihydrofolate reductase	-
SEQ_RS11735 (SEQ_1112)	-	1099744..1099914 (+)	171	WP_012515696.1	hypothetical protein	-
SEQ_RS05435 (SEQ_1113)	clpX	1099950..1101179 (+)	1230	WP_012679520.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SEQ_RS05440 (SEQ_1114)	yihA	1101189..1101788 (+)	600	WP_012679521.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SEQ_RS05445 (SEQ_1116)	-	1102152..1105154 (+)	3003	WP_012679522.1	leucine-rich repeat domain-containing protein	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45183.75 Da
• Isoelectric Point: 4.5726

>NTDB_id=33524 SEQ_RS05435 WP_012679520.1 1099950..1101179(+) (clpX) [Streptococcus equi subsp. equi 4047]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMVQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=33524 SEQ_RS05435 WP_012679520.1 1099950..1101179(+) (clpX) [Streptococcus equi subsp. equi 4047]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGATGATGATGATGT
GGATTTGCAGAAGTCCAATATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTGGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGACGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGGTACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGTAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAATCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.509	100	0.885
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.603	98.044	0.575