Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SEQ_RS04530 Genome accession   NC_012471
Coordinates   904446..905324 (+) Length   292 a.a.
NCBI ID   WP_012679397.1    Uniprot ID   C0M7G7
Organism   Streptococcus equi subsp. equi 4047     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 899446..910324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEQ_RS04500 (SEQ_0922) - 900662..901078 (+) 417 WP_012679393.1 F0F1 ATP synthase subunit epsilon -
  SEQ_RS04510 (SEQ_0924) - 901241..902592 (+) 1352 WP_173292422.1 IS3 family transposase -
  SEQ_RS04515 (SEQ_0925) - 902651..902887 (+) 237 WP_012678109.1 DUF1146 family protein -
  SEQ_RS04520 (SEQ_0926) murA 902951..904222 (+) 1272 WP_012679395.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SEQ_RS04525 (SEQ_0927) - 904226..904414 (+) 189 WP_012679396.1 DNA-directed RNA polymerase subunit beta -
  SEQ_RS04530 (SEQ_0928) endA 904446..905324 (+) 879 WP_012679397.1 DNA/RNA non-specific endonuclease Machinery gene
  SEQ_RS11730 - 905338..905496 (+) 159 WP_014622728.1 hypothetical protein -
  SEQ_RS04535 (SEQ_0929) pheS 906236..907279 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  SEQ_RS04545 (SEQ_0930) pheT 907469..909874 (+) 2406 WP_012679398.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31810.91 Da        Isoelectric Point: 10.2312

>NTDB_id=33520 SEQ_RS04530 WP_012679397.1 904446..905324(+) (endA) [Streptococcus equi subsp. equi 4047]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRILGSDTQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=33520 SEQ_RS04530 WP_012679397.1 904446..905324(+) (endA) [Streptococcus equi subsp. equi 4047]
ATGATCAAAAAGAAGAAAGACATCAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTCTTGGCTCTGACACGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0M7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524

Multiple sequence alignment