Detailed information NTG0033486

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SZO_RS08755
• Genome accession: NC_012470
• Coordinates: 1876139..1877074 (-)
• Length: 311 a.a.
• NCBI ID: WP_012678543.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1871139..1882074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SZO_RS08730 (SZO_16730)	tsaD	1871225..1872241 (-)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SZO_RS08735 (SZO_16740)	rimI	1872231..1872656 (-)	426	WP_012678540.1	ribosomal protein S18-alanine N-acetyltransferase	-
SZO_RS08740 (SZO_16750)	tsaB	1872659..1873357 (-)	699	WP_012678541.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SZO_RS08745 (SZO_16760)	-	1873643..1873873 (+)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
SZO_RS08750 (SZO_16770)	rnjA	1873875..1875557 (+)	1683	WP_012514941.1	ribonuclease J1	-
SZO_RS08755 (SZO_16780)	amiF	1876139..1877074 (-)	936	WP_012678543.1	ABC transporter ATP-binding protein	Regulator
SZO_RS08760 (SZO_16790)	oppD	1877074..1878120 (-)	1047	WP_012678544.1	ABC transporter ATP-binding protein	Regulator
SZO_RS08765 (SZO_16800)	-	1878133..1879164 (-)	1032	WP_012678545.1	ABC transporter permease	-
SZO_RS08770 (SZO_16810)	-	1879174..1880088 (-)	915	WP_012678546.1	ABC transporter permease	-
SZO_RS08775 (SZO_16820)	-	1880255..1881913 (-)	1659	WP_012678547.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35027.15 Da
• Isoelectric Point: 8.3807

>NTDB_id=33486 SZO_RS08755 WP_012678543.1 1876139..1877074(-) (amiF) [Streptococcus equi subsp. zooepidemicus]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=33486 SZO_RS08755 WP_012678543.1 1876139..1877074(-) (amiF) [Streptococcus equi subsp. zooepidemicus]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATTTTTAATGGAGAAAATGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTCAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.575	98.392	0.537
amiF	Streptococcus thermophilus LMG 18311	54.248	98.392	0.534
amiF	Streptococcus salivarius strain HSISS4	53.922	98.392	0.531