Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SZO_RS06060 Genome accession   NC_012470
Coordinates   1287277..1288155 (-) Length   292 a.a.
NCBI ID   WP_012678106.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1282277..1293155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS06045 (SZO_11560) pheT 1282749..1285154 (-) 2406 WP_012678104.1 phenylalanine--tRNA ligase subunit beta -
  SZO_RS06055 (SZO_11570) pheS 1285344..1286387 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  SZO_RS06060 (SZO_11580) endA 1287277..1288155 (-) 879 WP_012678106.1 DNA/RNA non-specific endonuclease Machinery gene
  SZO_RS06065 (SZO_11590) - 1288187..1288375 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  SZO_RS06070 (SZO_11600) murA 1288379..1289650 (-) 1272 WP_012678108.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SZO_RS06075 (SZO_11610) - 1289714..1289950 (-) 237 WP_012678109.1 DUF1146 family protein -
  SZO_RS06080 (SZO_11620) - 1290084..1290500 (-) 417 WP_012678110.1 F0F1 ATP synthase subunit epsilon -
  SZO_RS06085 (SZO_11630) atpD 1290513..1291919 (-) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  SZO_RS06090 (SZO_11640) - 1292087..1292962 (-) 876 WP_012678111.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31989.01 Da        Isoelectric Point: 10.1779

>NTDB_id=33474 SZO_RS06060 WP_012678106.1 1287277..1288155(-) (endA) [Streptococcus equi subsp. zooepidemicus]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFDSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGRSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYDGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVAPSQH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=33474 SZO_RS06060 WP_012678106.1 1287277..1288155(-) (endA) [Streptococcus equi subsp. zooepidemicus]
ATGATCAAAAAGAAGAAAGATATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGACTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAAGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATCATTAACCATAATAAAACAACGCTAAATGCAAAGGT
AGCCAGTCTGCCCTATGCCAATAATAAAACAAAACTGGTACAAGGGCGAAGTGTTCCTACCGTAGCCAACGCCCTGCTAA
CCAAGTCAACTCGACAGTATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAAGGATTAAAGGGAAGATACAGTCACGCAGTAGATAGAGGACACCTCCTGGGCTATGCACTTGTTGGTGGGCTAAA
GGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCCAATCAAGCAGCCAACGAGCGAT
CAACCGGACAAAACTATTATGAAACAAAGATTCGCAGAGCCCTAGATAGCAACAAGCGTGTCCGCTATCGTGTAACCCTA
CTTTATGATGGAAATAACCTCTTAGCAAGCGGCAGTCACCTTGAGGCAAAGTCATCAGACGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTGCAGATTGATTATCAAACAGGTCAGATCACTGTAGCCCCTTCACAGCATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524

Multiple sequence alignment