Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   EQK21_RS08645 Genome accession   NZ_CP035110
Coordinates   1708950..1709507 (-) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM103465     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703950..1714507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK21_RS08620 (EQK21_08620) - 1704144..1704776 (+) 633 WP_128530873.1 type II CAAX endopeptidase family protein -
  EQK21_RS08625 (EQK21_08625) - 1704830..1705477 (-) 648 WP_065825222.1 redox-sensing transcriptional repressor Rex -
  EQK21_RS08630 (EQK21_08630) - 1705673..1707616 (+) 1944 WP_128530874.1 ABC-F family ATP-binding cassette domain-containing protein -
  EQK21_RS08635 (EQK21_08635) - 1707887..1708246 (-) 360 WP_004265057.1 YccF domain-containing protein -
  EQK21_RS08640 (EQK21_08640) - 1708353..1708670 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  EQK21_RS08645 (EQK21_08645) sigH 1708950..1709507 (-) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  EQK21_RS08650 (EQK21_08650) - 1709583..1710116 (-) 534 WP_089557038.1 NYN domain-containing protein -
  EQK21_RS08655 (EQK21_08655) rlmB 1710120..1711007 (-) 888 WP_089557039.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EQK21_RS08660 (EQK21_08660) - 1710994..1711401 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  EQK21_RS08665 (EQK21_08665) cysS 1711398..1712804 (-) 1407 WP_128530875.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=334609 EQK21_RS08645 WP_039098349.1 1708950..1709507(-) (sigH) [Latilactobacillus curvatus strain SRCM103465]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=334609 EQK21_RS08645 WP_039098349.1 1708950..1709507(-) (sigH) [Latilactobacillus curvatus strain SRCM103465]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACGCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTACCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment