Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EM803_RS07100 Genome accession   NZ_CP035105
Coordinates   1441437..1441718 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpbs2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436437..1446718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM803_RS07080 - 1437150..1438490 (-) 1341 WP_205740257.1 hypothetical protein -
  EM803_RS07090 comB4 1438809..1441172 (-) 2364 WP_128481705.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EM803_RS07095 comB3 1441174..1441437 (-) 264 WP_128481706.1 competence protein ComB Machinery gene
  EM803_RS07100 comB2 1441437..1441718 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  EM803_RS07105 - 1441863..1442690 (-) 828 WP_128481707.1 DUF5718 family protein -
  EM803_RS07110 - 1442780..1443832 (-) 1053 WP_128481708.1 MnmA/TRMU family protein -
  EM803_RS07115 dnaG 1443829..1445508 (-) 1680 WP_128481709.1 DNA primase -
  EM803_RS07125 groES 1445784..1446140 (+) 357 WP_000671955.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=334489 EM803_RS07100 WP_001272686.1 1441437..1441718(-) (comB2) [Helicobacter pylori strain Hpbs2]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=334489 EM803_RS07100 WP_001272686.1 1441437..1441718(-) (comB2) [Helicobacter pylori strain Hpbs2]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment