Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   FYA21_RS02255 Genome accession   NZ_CP043180
Coordinates   453270..453761 (-) Length   163 a.a.
NCBI ID   WP_024436452.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PG20180064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448270..458761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS02245 (FYA21_02245) - 451677..452366 (-) 690 WP_079276543.1 pilus assembly protein PilX -
  FYA21_RS02250 (FYA21_02250) - 452363..453277 (-) 915 WP_024438276.1 PilW family protein -
  FYA21_RS02255 (FYA21_02255) pilV 453270..453761 (-) 492 WP_024436452.1 type IV pilus modification protein PilV Machinery gene
  FYA21_RS02260 (FYA21_02260) - 453776..454216 (-) 441 WP_024436453.1 Tfp pilus assembly protein FimT/FimU -
  FYA21_RS02265 (FYA21_02265) - 454122..454373 (+) 252 Protein_427 hypothetical protein -
  FYA21_RS02270 (FYA21_02270) ispH 454386..455336 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FYA21_RS02275 (FYA21_02275) gmk 455459..456088 (+) 630 WP_000015937.1 guanylate kinase -
  FYA21_RS02280 (FYA21_02280) rpoZ 456161..456439 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FYA21_RS02285 (FYA21_02285) - 456478..456608 (+) 131 Protein_431 hypothetical protein -
  FYA21_RS02290 (FYA21_02290) - 456648..458753 (+) 2106 WP_096640147.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17255.67 Da        Isoelectric Point: 4.7821

>NTDB_id=334322 FYA21_RS02255 WP_024436452.1 453270..453761(-) (pilV) [Acinetobacter baumannii strain PG20180064]
MITSQKGAGLMEVLVALLLLSIAVLGFVALQVRAIAASTEAGQNIQAINIARDLAERMRVNRTGLNSYVDLSEGETLTDC
SSGFCSAANMAKYDYAQVKQRATDLGMSLVVLNCQGSTLTRQCIYVAWGGTTATDGSSGSNCTNGTAYVPDAKCIIMEVY
NHD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=334322 FYA21_RS02255 WP_024436452.1 453270..453761(-) (pilV) [Acinetobacter baumannii strain PG20180064]
ATGATAACATCTCAAAAAGGTGCTGGTTTGATGGAGGTGCTTGTTGCATTACTTTTATTGAGCATTGCTGTACTGGGTTT
TGTTGCTTTACAAGTACGAGCAATTGCTGCAAGCACTGAAGCAGGTCAGAACATTCAAGCAATCAATATAGCCCGAGATT
TAGCAGAGCGTATGCGTGTGAACCGAACTGGTTTAAATAGCTATGTAGATCTTAGCGAAGGCGAAACATTAACAGACTGT
TCTTCTGGGTTTTGTAGTGCTGCTAATATGGCGAAATATGATTATGCTCAGGTTAAACAACGTGCTACAGACTTAGGAAT
GAGTCTTGTGGTGTTGAATTGCCAAGGCTCTACGTTAACTCGTCAATGCATATATGTAGCATGGGGCGGGACAACAGCTA
CAGATGGAAGTAGTGGTTCAAATTGTACTAATGGCACAGCCTATGTACCTGATGCCAAATGTATCATTATGGAGGTTTAC
AACCATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

39.548

100

0.429
  pilV Acinetobacter baylyi ADP1

37.5

100

0.405