Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | EO946_RS08615 | Genome accession | NZ_CP034943 |
| Coordinates | 1657907..1658686 (+) | Length | 259 a.a. |
| NCBI ID | WP_003220850.1 | Uniprot ID | G4NSM6 |
| Organism | Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1632396..1673380 | 1657907..1658686 | within | 0 |
Gene organization within MGE regions
Location: 1632396..1673380
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EO946_RS08495 (EO946_08495) | smc | 1633097..1636657 (+) | 3561 | WP_003221570.1 | chromosome segregation protein SMC | - |
| EO946_RS08500 (EO946_08500) | ftsY | 1636677..1637666 (+) | 990 | WP_003221572.1 | signal recognition particle-docking protein FtsY | - |
| EO946_RS08505 (EO946_08505) | - | 1637801..1638900 (+) | 1100 | WP_244944509.1 | IS3-like element ISBsu1 family transposase | - |
| EO946_RS08510 (EO946_08510) | - | 1638964..1639449 (-) | 486 | WP_003220807.1 | Ig-like domain-containing protein | - |
| EO946_RS08515 (EO946_08515) | - | 1639628..1639960 (+) | 333 | WP_003220809.1 | putative DNA-binding protein | - |
| EO946_RS08520 (EO946_08520) | ffh | 1639974..1641314 (+) | 1341 | WP_003220811.1 | signal recognition particle protein | - |
| EO946_RS08525 (EO946_08525) | rpsP | 1641420..1641692 (+) | 273 | WP_003220815.1 | 30S ribosomal protein S16 | - |
| EO946_RS08530 (EO946_08530) | - | 1641692..1641937 (+) | 246 | WP_003220817.1 | KH domain-containing protein | - |
| EO946_RS08535 (EO946_08535) | - | 1642059..1642445 (+) | 387 | WP_003220819.1 | YlqD family protein | - |
| EO946_RS08540 (EO946_08540) | rimM | 1642450..1642974 (+) | 525 | WP_003220821.1 | ribosome maturation factor RimM | - |
| EO946_RS08545 (EO946_08545) | trmD | 1642971..1643702 (+) | 732 | WP_003220823.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EO946_RS08550 (EO946_08550) | rplS | 1643842..1644189 (+) | 348 | WP_003220825.1 | 50S ribosomal protein L19 | - |
| EO946_RS08555 (EO946_08555) | ylqF | 1644334..1645182 (+) | 849 | WP_003220827.1 | ribosome biogenesis GTPase YlqF | - |
| EO946_RS08560 (EO946_08560) | rnhB | 1645253..1646020 (+) | 768 | WP_003220829.1 | ribonuclease HII | - |
| EO946_RS08565 (EO946_08565) | - | 1646049..1647779 (+) | 1731 | WP_003220832.1 | hypothetical protein | - |
| EO946_RS08570 (EO946_08570) | - | 1647776..1648057 (+) | 282 | WP_003220834.1 | FlhB-like flagellar biosynthesis protein | - |
| EO946_RS08575 (EO946_08575) | sucC | 1648231..1649388 (+) | 1158 | WP_003220835.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EO946_RS08580 (EO946_08580) | sucD | 1649417..1650319 (+) | 903 | WP_003220837.1 | succinate--CoA ligase subunit alpha | - |
| EO946_RS08585 (EO946_08585) | dprA | 1650380..1651273 (+) | 894 | WP_003220839.1 | DNA-processing protein DprA | Machinery gene |
| EO946_RS08590 (EO946_08590) | topA | 1651460..1653535 (+) | 2076 | WP_003220843.1 | type I DNA topoisomerase | - |
| EO946_RS08595 (EO946_08595) | trmFO | 1653611..1654918 (+) | 1308 | WP_003220844.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EO946_RS08600 (EO946_08600) | xerC | 1654986..1655900 (+) | 915 | WP_003220846.1 | tyrosine recombinase XerC | - |
| EO946_RS08605 (EO946_08605) | clpQ | 1655913..1656458 (+) | 546 | WP_003220848.1 | ATP-dependent protease subunit ClpQ | - |
| EO946_RS08610 (EO946_08610) | hslU | 1656475..1657867 (+) | 1393 | Protein_1630 | HslU--HslV peptidase ATPase subunit | - |
| EO946_RS08615 (EO946_08615) | codY | 1657907..1658686 (+) | 780 | WP_003220850.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| EO946_RS08620 (EO946_08620) | flgB | 1659067..1659456 (+) | 390 | WP_003220852.1 | flagellar basal body rod protein FlgB | - |
| EO946_RS08625 (EO946_08625) | flgC | 1659456..1659908 (+) | 453 | WP_003220854.1 | flagellar basal body rod protein FlgC | - |
| EO946_RS08630 (EO946_08630) | fliE | 1659920..1660240 (+) | 321 | WP_003238544.1 | flagellar hook-basal body complex protein FliE | - |
| EO946_RS08635 (EO946_08635) | fliF | 1660286..1661896 (+) | 1611 | WP_079996358.1 | flagellar basal-body MS-ring/collar protein FliF | - |
| EO946_RS08640 (EO946_08640) | fliG | 1661909..1662925 (+) | 1017 | WP_003220860.1 | flagellar motor switch protein FliG | - |
| EO946_RS08645 (EO946_08645) | fliH | 1662918..1663670 (+) | 753 | WP_003220862.1 | flagellar assembly protein FliH | - |
| EO946_RS08650 (EO946_08650) | fliI | 1663667..1664983 (+) | 1317 | WP_003220864.1 | flagellar protein export ATPase FliI | - |
| EO946_RS08655 (EO946_08655) | fliJ | 1664986..1665429 (+) | 444 | WP_003220866.1 | flagellar export protein FliJ | - |
| EO946_RS08660 (EO946_08660) | - | 1665441..1666055 (+) | 615 | WP_003220869.1 | MotE family protein | - |
| EO946_RS08665 (EO946_08665) | - | 1666067..1667530 (+) | 1464 | WP_003220871.1 | flagellar hook-length control protein FliK | - |
| EO946_RS08670 (EO946_08670) | flgD | 1667527..1667949 (+) | 423 | WP_003220873.1 | flagellar hook assembly protein FlgD | - |
| EO946_RS08675 (EO946_08675) | flgG | 1667971..1668765 (+) | 795 | WP_003220874.1 | flagellar basal body rod protein FlgG | - |
| EO946_RS08680 (EO946_08680) | swrD | 1668805..1669020 (+) | 216 | WP_003220876.1 | swarming motility protein SwrD | - |
| EO946_RS08685 (EO946_08685) | fliL | 1669017..1669442 (+) | 426 | WP_003220878.1 | flagellar basal body-associated protein FliL | - |
| EO946_RS08690 (EO946_08690) | fliM | 1669476..1670474 (+) | 999 | WP_003220879.1 | flagellar motor switch protein FliM | - |
| EO946_RS08695 (EO946_08695) | fliY | 1670464..1671603 (+) | 1140 | WP_003220881.1 | flagellar motor switch phosphatase FliY | - |
| EO946_RS08700 (EO946_08700) | cheY | 1671629..1671991 (+) | 363 | WP_003220882.1 | chemotaxis protein CheY | - |
| EO946_RS08705 (EO946_08705) | fliZ | 1672006..1672665 (+) | 660 | WP_003220884.1 | flagella biosynthesis regulatory protein FliZ | - |
| EO946_RS08710 (EO946_08710) | fliP | 1672658..1673323 (+) | 666 | WP_003220886.1 | flagellar type III secretion system pore protein FliP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 29013.22 Da Isoelectric Point: 4.6514
>NTDB_id=333577 EO946_RS08615 WP_003220850.1 1657907..1658686(+) (codY) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
Nucleotide
Download Length: 780 bp
>NTDB_id=333577 EO946_RS08615 WP_003220850.1 1657907..1658686(+) (codY) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTATTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACTTGTTTCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGGATTACCC
GTTCTGTTATTGTGAATGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTATTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACTTGTTTCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGGATTACCC
GTTCTGTTATTGTGAATGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.451 |
98.456 |
0.467 |