Detailed information NTG0033288

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HICON_RS08570
• Genome accession: NC_014922
• Coordinates: 1713103..1714443 (-)
• Length: 446 a.a.
• NCBI ID: WP_013525964.1
• Uniprot ID: -
• Organism: Haemophilus influenzae F3047
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1708103..1719443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HICON_RS08550 (HICON_00190)	-	1708507..1710027 (-)	1521	WP_006996423.1	Na+/H+ antiporter NhaC family protein	-
HICON_RS08555 (HICON_00200)	-	1710470..1710874 (+)	405	WP_006996424.1	H-NS family nucleoid-associated regulatory protein	-
HICON_RS08560 (HICON_00210)	purU	1710944..1711717 (+)	774	WP_041175200.1	formyltetrahydrofolate deformylase	-
HICON_RS08565 (HICON_00220)	aroA	1711717..1713015 (+)	1299	WP_006996425.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
HICON_RS08570 (HICON_00230)	rarA	1713103..1714443 (-)	1341	WP_013525964.1	replication-associated recombination protein A	Machinery gene
HICON_RS08575 (HICON_00240)	lolA	1714505..1715122 (-)	618	WP_006996427.1	outer membrane lipoprotein chaperone LolA	-
HICON_RS08580 (HICON_00250)	-	1715140..1717908 (-)	2769	WP_013527753.1	DNA translocase FtsK	-
HICON_RS08585 (HICON_00260)	lrp	1717910..1718389 (-)	480	WP_005664572.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50363.21 Da
• Isoelectric Point: 6.5180

>NTDB_id=33288 HICON_RS08570 WP_013525964.1 1713103..1714443(-) (rarA) [Haemophilus influenzae F3047]
MSNLNFDFAENDFRPLAARMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLSDRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLRTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPLELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=33288 HICON_RS08570 WP_013525964.1 1713103..1714443(-) (rarA) [Haemophilus influenzae F3047]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCAAGAATGCGCCCAACAAATCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGCCATATTCATTCAATGA
TTTTGTGGGGACCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTTCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCAGAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTTAATGGGGATGCACGATTAGCTTTGAATT
GCCTCGAATTAATGGTGGATATGGCGGATGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGCCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGAGACCCTTTATATGTTGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTCGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGAGCCATTGCCCAAGCCATTATCTATCTTGCGGTAGCGCCAAAAAGTAATGC
AGTTTATACCGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTACCTGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTCGGATATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACTTGAATTAAAAGACACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• AAA C-terminal domain (AAA_assoc_2) (188-266)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	94.843	0.372