Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EKQ63_RS23600 Genome accession   NZ_CP034686
Coordinates   4113934..4116273 (-) Length   779 a.a.
NCBI ID   WP_087954222.1    Uniprot ID   -
Organism   Bacillus sp. BD59S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4108934..4121273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS30015 - 4110160..4110336 (-) 177 WP_001242605.1 hypothetical protein -
  EKQ63_RS23585 (EKQ63_23565) - 4110523..4110963 (-) 441 WP_001266956.1 D-tyrosyl-tRNA(Tyr) deacylase -
  EKQ63_RS23590 (EKQ63_23570) relA 4110981..4113164 (-) 2184 WP_001262809.1 GTP diphosphokinase -
  EKQ63_RS23595 (EKQ63_23575) - 4113374..4113886 (-) 513 WP_000346214.1 adenine phosphoribosyltransferase -
  EKQ63_RS23600 (EKQ63_23580) recJ 4113934..4116273 (-) 2340 WP_087954222.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EKQ63_RS23605 (EKQ63_23585) - 4116375..4117268 (-) 894 WP_087954221.1 cation diffusion facilitator family transporter -
  EKQ63_RS23610 (EKQ63_23590) secDF 4117575..4119839 (-) 2265 WP_087954220.1 protein translocase subunit SecDF -
  EKQ63_RS23615 (EKQ63_23595) - 4120108..4120392 (-) 285 WP_087954219.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88133.67 Da        Isoelectric Point: 4.8389

>NTDB_id=332504 EKQ63_RS23600 WP_087954222.1 4113934..4116273(-) (recJ) [Bacillus sp. BD59S]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEDAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANIAELQKEKITMVYFSEEVLNKFSLEDYKEYMMHASEVTELDDQYIVFLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKSPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=332504 EKQ63_RS23600 WP_087954222.1 4113934..4116273(-) (recJ) [Bacillus sp. BD59S]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGTGCAGATGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGATATGGACCAAACGAAGACGCATTTCGTTGGGCAC
ATAGCGCAGGATTCTCACTCATTATTACTGTCGATACTGGTATCGCAGCTGTACATGAAGCGAAAGTAGCGAAGGAACTT
GGGATAGATCTAATTATTACAGATCACCATGAGCCGCCACCAGAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTGTATCCGTTTCACTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTTGCGCATGCACTACTCGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTGGCTGATTTAGTATCACTTCATGGAGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATTGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCACA
AAGTGAAATTACAGAAGAGAGTATTGGCTTCTCAATCGCACCGCGTATTAATGCAGTTGGACGTTTAGAGGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCCGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAACGAATTTCCCGCCTGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTGAAAGAAACAGCAAAAGGTTCAGCGCGTAGTATTGCAGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGTTTAAATGAGCAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTCGATGCATTTTGTAAAGTGGAGGACGTAACACTTGCAGCAATTGAAGATATGCAAAAGTTAGCACCATTTGGTGTT
GGAAATCCAAAGCCACGTATTGCAGTGAAAGATGCGGAGTTAGAAAGTATTCGTGCAATCGGATCAGACGGTTCACATTT
AAAAATGGCTCTTCGTGATGGACAAGCAACACTGGATACAATTGGATTTGGATTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAAGTATCTGTAATCGGGGAAGCGTCTATTAATGAATGGAATAATTTCAAGAAGCCGCAATTAATGGTACAA
GATATTGCGGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCAAATATAGCAGAGCTTCAGAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGTATATGATGC
ATGCATCAGAAGTAACAGAATTAGATGATCAATACATCGTGTTCCTTGATTTACCGAAAGGAACAGATGAATTACGAGAG
CTATTTAAAGTGGGGTTCCCGTCGCGAATTTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTACTATTCGTTCTTGAGCCAAAAATCACCATTTTCTTTAAGACAATATGGAGCGCAACTAT
GTCAGCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.584

99.358

0.522

Multiple sequence alignment