Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EKQ63_RS23530 Genome accession   NZ_CP034686
Coordinates   4096922..4099258 (-) Length   778 a.a.
NCBI ID   WP_143881558.1    Uniprot ID   A0A516QWY9
Organism   Bacillus sp. BD59S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4091922..4104258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS23505 (EKQ63_23485) - 4094584..4094928 (+) 345 WP_143881557.1 PH domain-containing protein -
  EKQ63_RS23510 (EKQ63_23490) - 4094967..4096034 (-) 1068 WP_000793117.1 AI-2E family transporter -
  EKQ63_RS23515 (EKQ63_23495) - 4096211..4096423 (+) 213 WP_000242555.1 hypothetical protein -
  EKQ63_RS23520 (EKQ63_23500) - 4096459..4096587 (-) 129 WP_001053553.1 YrzQ family protein -
  EKQ63_RS23525 (EKQ63_23505) - 4096606..4096794 (-) 189 WP_000469281.1 hypothetical protein -
  EKQ63_RS23530 (EKQ63_23510) recD2 4096922..4099258 (-) 2337 WP_143881558.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EKQ63_RS23535 (EKQ63_23515) - 4099356..4100015 (-) 660 WP_087954230.1 tetratricopeptide repeat protein -
  EKQ63_RS23540 (EKQ63_23520) mnmA 4100126..4101241 (-) 1116 WP_087954229.1 tRNA 2-thiouridine(34) synthase MnmA -
  EKQ63_RS23545 (EKQ63_23525) - 4101258..4102403 (-) 1146 WP_087995434.1 cysteine desulfurase family protein -
  EKQ63_RS23550 (EKQ63_23530) cymR 4102439..4102855 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87406.91 Da        Isoelectric Point: 5.2015

>NTDB_id=332503 EKQ63_RS23530 WP_143881558.1 4096922..4099258(-) (recD2) [Bacillus sp. BD59S]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGKVAEEDVVGCIEMMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=332503 EKQ63_RS23530 WP_143881558.1 4096922..4099258(-) (recD2) [Bacillus sp. BD59S]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCACGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTTGAAACATTTAAGAAAGAATTGCCACAAACAAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGAATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTTTCA
CTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAA
AGTGGCTGAGGAAGACGTTGTAGGCTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCGACGCTGTTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAGATGTATGCTTCACTTCACGGGTTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGTCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTCATTATTGATGAAT
TCTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCATTGCCCACGAACATTCAAGTTATCGTTGTAGGAGAT
GAAGATCAATTGCCATCTGTAGGACCTGGACAAGTGCTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAGGCGGAAGGCTCATCAGTTATTCAACTTGCCCATGCGATAAAAAATGGAACACTCCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCCGGTATTAA
TGTATTAAACGAAGCGTTGCAAGAAGTGTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGAGATAAAGTACTGCAACTCGTGAATCAGCCTGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATCATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAGCCGGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCACAAGGCAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAATCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QWY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment