Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | EKQ63_RS20385 | Genome accession | NZ_CP034686 |
| Coordinates | 3538055..3538834 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. BD59S | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3511431..3557468 | 3538055..3538834 | within | 0 |
Gene organization within MGE regions
Location: 3511431..3557468
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKQ63_RS20265 (EKQ63_20245) | - | 3511626..3511877 (-) | 252 | WP_001239749.1 | YlmC/YmxH family sporulation protein | - |
| EKQ63_RS20270 (EKQ63_20250) | - | 3512008..3513249 (-) | 1242 | WP_000592994.1 | M16 family metallopeptidase | - |
| EKQ63_RS20275 (EKQ63_20255) | - | 3513336..3514235 (-) | 900 | WP_087954503.1 | polysaccharide deacetylase family protein | - |
| EKQ63_RS20280 (EKQ63_20260) | pnp | 3514387..3516525 (-) | 2139 | WP_086421443.1 | polyribonucleotide nucleotidyltransferase | - |
| EKQ63_RS20285 (EKQ63_20265) | rpsO | 3516686..3516955 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| EKQ63_RS20290 (EKQ63_20270) | ribF | 3517056..3518027 (-) | 972 | WP_000766719.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| EKQ63_RS20295 (EKQ63_20275) | truB | 3518071..3518994 (-) | 924 | WP_061131602.1 | tRNA pseudouridine(55) synthase TruB | - |
| EKQ63_RS20300 (EKQ63_20280) | rbfA | 3519081..3519437 (-) | 357 | WP_000776443.1 | 30S ribosome-binding factor RbfA | - |
| EKQ63_RS20305 (EKQ63_20285) | - | 3519453..3519734 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| EKQ63_RS20310 (EKQ63_20290) | infB | 3519731..3521791 (-) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| EKQ63_RS20315 (EKQ63_20295) | - | 3521796..3522107 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| EKQ63_RS20320 (EKQ63_20300) | rnpM | 3522108..3522380 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| EKQ63_RS20325 (EKQ63_20305) | nusA | 3522392..3523498 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| EKQ63_RS20330 (EKQ63_20310) | rimP | 3523516..3523986 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| EKQ63_RS20335 (EKQ63_20315) | - | 3524319..3528620 (-) | 4302 | WP_087954502.1 | PolC-type DNA polymerase III | - |
| EKQ63_RS20340 (EKQ63_20320) | - | 3528745..3530445 (-) | 1701 | WP_087954501.1 | proline--tRNA ligase | - |
| EKQ63_RS20345 (EKQ63_20325) | rseP | 3530555..3531811 (-) | 1257 | WP_139866977.1 | RIP metalloprotease RseP | - |
| EKQ63_RS20350 (EKQ63_20330) | dxr | 3531828..3532970 (-) | 1143 | WP_087954499.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| EKQ63_RS20355 (EKQ63_20335) | cdsA | 3532994..3533785 (-) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| EKQ63_RS20360 (EKQ63_20340) | uppS | 3533803..3534579 (-) | 777 | WP_046198502.1 | isoprenyl transferase | - |
| EKQ63_RS20365 (EKQ63_20345) | frr | 3534665..3535222 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| EKQ63_RS20370 (EKQ63_20350) | pyrH | 3535225..3535947 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| EKQ63_RS20375 (EKQ63_20355) | tsf | 3536014..3536901 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| EKQ63_RS20380 (EKQ63_20360) | rpsB | 3537005..3537706 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| EKQ63_RS20385 (EKQ63_20365) | codY | 3538055..3538834 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| EKQ63_RS20390 (EKQ63_20370) | hslU | 3538912..3540303 (-) | 1392 | WP_000550082.1 | ATP-dependent protease ATPase subunit HslU | - |
| EKQ63_RS20395 (EKQ63_20375) | hslV | 3540326..3540868 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| EKQ63_RS20400 (EKQ63_20380) | xerC | 3540911..3541810 (-) | 900 | WP_087954498.1 | tyrosine recombinase XerC | - |
| EKQ63_RS20405 (EKQ63_20385) | trmFO | 3541876..3543180 (-) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EKQ63_RS20410 (EKQ63_20390) | topA | 3543231..3545309 (-) | 2079 | WP_046198501.1 | type I DNA topoisomerase | - |
| EKQ63_RS20415 (EKQ63_20395) | dprA | 3545454..3546323 (-) | 870 | WP_087954497.1 | DNA-processing protein DprA | - |
| EKQ63_RS20420 (EKQ63_20400) | sucD | 3546411..3547313 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| EKQ63_RS20425 (EKQ63_20405) | sucC | 3547333..3548493 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EKQ63_RS20430 (EKQ63_20410) | rnhB | 3548687..3549460 (-) | 774 | WP_087954496.1 | ribonuclease HII | - |
| EKQ63_RS20435 (EKQ63_20415) | ylqF | 3549513..3550403 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| EKQ63_RS20440 (EKQ63_20420) | lepB | 3550424..3550975 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| EKQ63_RS20445 (EKQ63_20425) | rplS | 3551077..3551421 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| EKQ63_RS20450 (EKQ63_20430) | trmD | 3551568..3552302 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EKQ63_RS20455 (EKQ63_20435) | rimM | 3552302..3552817 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| EKQ63_RS20460 (EKQ63_20440) | - | 3552939..3553166 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| EKQ63_RS20465 (EKQ63_20445) | rpsP | 3553181..3553453 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| EKQ63_RS20470 (EKQ63_20450) | ffh | 3553554..3554903 (-) | 1350 | WP_087954495.1 | signal recognition particle protein | - |
| EKQ63_RS20475 (EKQ63_20455) | - | 3554916..3555248 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| EKQ63_RS20480 (EKQ63_20460) | ftsY | 3555382..3556371 (-) | 990 | WP_087954494.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=332494 EKQ63_RS20385 WP_000421288.1 3538055..3538834(-) (codY) [Bacillus sp. BD59S]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=332494 EKQ63_RS20385 WP_000421288.1 3538055..3538834(-) (codY) [Bacillus sp. BD59S]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAATGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAATGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |