Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EKH84_RS15760 Genome accession   NZ_CP034675
Coordinates   3486645..3488489 (-) Length   614 a.a.
NCBI ID   WP_127067030.1    Uniprot ID   A0A5B9YEX8
Organism   Cellulosilyticum sp. WCF-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3481645..3493489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKH84_RS15735 (EKH84_15735) scfA 3482695..3482832 (-) 138 WP_013657560.1 six-cysteine ranthipeptide SCIFF -
  EKH84_RS15740 (EKH84_15740) - 3482975..3483379 (-) 405 WP_013657561.1 TIGR04086 family membrane protein -
  EKH84_RS15745 (EKH84_15745) - 3483471..3484325 (+) 855 WP_190283355.1 PHP domain-containing protein -
  EKH84_RS15750 (EKH84_15750) - 3484369..3484761 (-) 393 WP_013657563.1 hypothetical protein -
  EKH84_RS15755 (EKH84_15755) - 3484995..3486551 (+) 1557 WP_127067029.1 ABC-F family ATP-binding cassette domain-containing protein -
  EKH84_RS15760 (EKH84_15760) rcrQ 3486645..3488489 (-) 1845 WP_127067030.1 ABC transporter ATP-binding protein Regulator
  EKH84_RS15765 (EKH84_15765) - 3488482..3490215 (-) 1734 WP_127067031.1 ABC transporter ATP-binding protein -
  EKH84_RS15770 (EKH84_15770) - 3490234..3490857 (-) 624 WP_127067032.1 TetR family transcriptional regulator -
  EKH84_RS15775 (EKH84_15775) - 3491165..3491671 (-) 507 WP_013657568.1 GNAT family N-acetyltransferase -
  EKH84_RS15780 (EKH84_15780) yidA 3491747..3492553 (-) 807 WP_127067033.1 sugar-phosphatase -
  EKH84_RS15785 (EKH84_15785) - 3492657..3493196 (-) 540 WP_127067034.1 hypothetical protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68177.95 Da        Isoelectric Point: 6.2023

>NTDB_id=332421 EKH84_RS15760 WP_127067030.1 3486645..3488489(-) (rcrQ) [Cellulosilyticum sp. WCF-2]
MSENKRPRGPMGGHGPMGGMGAGEKADDFKGTMKKLINYLKQYMVGIVVVMIFAIASTVFSIYGPSILGDATNVLVEGIM
AAVQTGQLVIDYTKIRNILLFLLGLYLLSAAFSYIQGWVMTGVSQKVTYKLRNDITEKINRMPLKYFDTHTHGEVLSRIT
NDVDTVSQTLGQSLTQIITSITMVIGVLIMMIRISWLMTLAALIVIPLSMFFVMGVVKKSQKYFRSQQEYLGHINGHVEE
MYGGHVVVKAFNGEEESMKQFNAYNETLYHSAWKSQFISGMMMPIMGFIGNLGYVLVCILGGVLAVKNTVSIGDIQAFIQ
YMRNFTQPLSQIASISNTLQSTAAAAERVFAFLDEEEESVESSTPVKLENPEGQVTFENVHFGYNPDKIIINDFSADVKP
GMKVAIVGPTGAGKTTVVKLLMRFYDLQSGKIKIDGHDICDFTRSDLRDLFGMVLQDTWLYNGSIMENIRYGKQDATDEE
VIEAAKAAHVHSFVKTLPDGYRMVLNEEASNVSQGQKQLLTIARAILSDPTILILDEATSSVDTRTEVLIQKAMENLMKG
RTSFIIAHRLSTIRDADLILVMKDGDIIEKGTHEELLKQGTFYAQLYNSQFEAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=332421 EKH84_RS15760 WP_127067030.1 3486645..3488489(-) (rcrQ) [Cellulosilyticum sp. WCF-2]
ATGAGTGAAAATAAAAGACCGAGAGGACCTATGGGTGGACATGGACCTATGGGTGGCATGGGTGCTGGTGAAAAAGCAGA
TGATTTTAAAGGCACCATGAAAAAATTAATCAACTATTTAAAGCAATATATGGTGGGAATTGTAGTGGTTATGATTTTTG
CTATTGCATCTACTGTCTTTTCTATTTATGGTCCTTCTATATTAGGAGATGCCACTAATGTTTTAGTAGAGGGCATTATG
GCTGCTGTGCAGACTGGTCAATTAGTGATTGACTACACTAAAATCCGTAATATTTTATTATTCTTACTAGGATTATATTT
GCTATCAGCAGCATTTAGTTACATTCAAGGCTGGGTAATGACAGGCGTTTCTCAAAAGGTAACTTATAAACTACGTAATG
ATATTACAGAAAAAATTAATCGTATGCCACTTAAATATTTTGATACACATACTCATGGTGAGGTACTTTCTCGTATTACA
AATGATGTAGATACAGTCAGTCAAACTTTGGGGCAAAGCTTAACTCAAATTATTACTTCTATAACTATGGTTATTGGTGT
ACTCATTATGATGATTCGAATTAGTTGGCTGATGACATTAGCAGCTTTAATAGTCATTCCACTTTCTATGTTCTTTGTGA
TGGGTGTGGTTAAAAAGTCACAAAAATACTTTAGAAGTCAACAAGAATACCTGGGTCATATTAATGGGCATGTAGAAGAA
ATGTATGGGGGGCATGTTGTTGTTAAAGCGTTTAATGGAGAAGAAGAGTCCATGAAGCAGTTTAATGCATATAACGAAAC
TCTATATCATTCGGCGTGGAAATCACAGTTTATATCAGGCATGATGATGCCTATTATGGGCTTTATAGGTAATCTAGGCT
ATGTACTGGTGTGCATTTTAGGTGGTGTTTTAGCTGTTAAAAATACAGTAAGTATTGGTGATATTCAAGCCTTTATTCAA
TACATGCGTAACTTTACTCAGCCACTTTCACAAATTGCAAGTATTTCAAATACATTACAATCTACAGCAGCAGCTGCTGA
ACGTGTATTTGCCTTTTTAGACGAGGAAGAAGAAAGTGTAGAAAGTAGTACGCCAGTGAAATTAGAAAATCCAGAAGGGC
AAGTTACCTTCGAAAATGTTCATTTTGGATATAATCCAGACAAAATCATTATTAATGACTTTTCAGCTGATGTTAAACCA
GGAATGAAGGTAGCTATTGTAGGGCCTACAGGTGCTGGTAAAACAACAGTCGTGAAGCTATTAATGCGCTTTTATGACTT
ACAATCTGGTAAGATTAAAATTGATGGCCATGATATTTGTGACTTTACAAGAAGTGATTTAAGAGATTTATTTGGTATGG
TACTTCAAGATACGTGGTTGTATAATGGTAGCATTATGGAAAATATACGCTATGGCAAACAAGATGCTACGGATGAAGAA
GTCATTGAAGCAGCCAAAGCAGCTCATGTTCATAGTTTTGTAAAAACCTTACCTGATGGTTACCGCATGGTTTTAAATGA
AGAAGCAAGTAATGTTTCTCAAGGACAAAAGCAACTATTAACCATTGCACGTGCCATTTTATCAGACCCTACAATTCTTA
TTTTAGATGAAGCCACAAGCTCAGTTGATACACGTACAGAAGTGCTTATTCAAAAAGCTATGGAAAACTTAATGAAAGGA
AGAACCAGTTTTATTATTGCTCACCGTTTATCTACGATTCGTGATGCAGACCTTATTTTAGTAATGAAAGATGGTGATAT
TATTGAAAAAGGTACTCATGAAGAACTCTTAAAACAAGGTACTTTCTATGCACAACTTTATAATAGTCAATTTGAAGCTA
GCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(392-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.541

95.114

0.49

Multiple sequence alignment