Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DYL72_RS08670 Genome accession   NZ_CP034672
Coordinates   1818568..1819269 (-) Length   233 a.a.
NCBI ID   WP_019282843.1    Uniprot ID   A0A233HRJ8
Organism   Vibrio anguillarum strain J360     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1813568..1824269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYL72_RS08640 (DYL72_08640) gspL 1813772..1814983 (+) 1212 WP_017049386.1 type II secretion system protein GspL -
  DYL72_RS08645 (DYL72_08645) - 1814994..1815491 (+) 498 WP_013855429.1 type II secretion system protein M -
  DYL72_RS08650 (DYL72_08650) - 1815488..1816246 (+) 759 WP_019282844.1 type II secretion system protein N -
  DYL72_RS08655 (DYL72_08655) cysQ 1816328..1817155 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DYL72_RS08660 (DYL72_08660) nudE 1817180..1817725 (-) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  DYL72_RS08665 (DYL72_08665) nfuA 1817881..1818468 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  DYL72_RS08670 (DYL72_08670) comF 1818568..1819269 (-) 702 WP_019282843.1 amidophosphoribosyltransferase Machinery gene
  DYL72_RS08675 (DYL72_08675) bioH 1819416..1820180 (+) 765 WP_038148688.1 pimeloyl-ACP methyl ester esterase BioH -
  DYL72_RS08680 (DYL72_08680) - 1820446..1820916 (+) 471 WP_026027513.1 hypothetical protein -
  DYL72_RS08685 (DYL72_08685) - 1821066..1823396 (-) 2331 WP_019282842.1 Tex family protein -
  DYL72_RS08690 (DYL72_08690) greB 1823740..1824222 (+) 483 WP_019282841.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26630.04 Da        Isoelectric Point: 9.4459

>NTDB_id=332373 DYL72_RS08670 WP_019282843.1 1818568..1819269(-) (comF) [Vibrio anguillarum strain J360]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFAPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=332373 DYL72_RS08670 WP_019282843.1 1818568..1819269(-) (comF) [Vibrio anguillarum strain J360]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTGCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTACACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCGCTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACACCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGACACCTTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTCGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HRJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment