Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EHW89_RS03025 Genome accession   NZ_CP034543
Coordinates   623004..623849 (+) Length   281 a.a.
NCBI ID   WP_126466645.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 618004..628849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS02995 (EHW89_02995) - 618331..619209 (+) 879 WP_003030484.1 F0F1 ATP synthase subunit gamma -
  EHW89_RS03000 (EHW89_03000) atpD 619244..620650 (+) 1407 WP_003030503.1 F0F1 ATP synthase subunit beta -
  EHW89_RS03005 (EHW89_03005) - 620661..621080 (+) 420 WP_003025266.1 F0F1 ATP synthase subunit epsilon -
  EHW89_RS03010 (EHW89_03010) - 621185..621415 (+) 231 WP_022526685.1 DUF1146 family protein -
  EHW89_RS03015 (EHW89_03015) murA 621454..622734 (+) 1281 WP_126466644.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EHW89_RS03020 (EHW89_03020) - 622727..622903 (+) 177 WP_003030460.1 DNA-directed RNA polymerase subunit beta -
  EHW89_RS03025 (EHW89_03025) endA 623004..623849 (+) 846 WP_126466645.1 DNA/RNA non-specific endonuclease Machinery gene
  EHW89_RS03030 (EHW89_03030) - 624139..625875 (+) 1737 WP_126466646.1 ABC transporter ATP-binding protein -
  EHW89_RS03035 (EHW89_03035) - 625885..627654 (+) 1770 WP_126466647.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30907.63 Da        Isoelectric Point: 10.3682

>NTDB_id=331777 EHW89_RS03025 WP_126466645.1 623004..623849(+) (endA) [Streptococcus periodonticum strain KCOM 2412]
MARKKSNQKVAQSVVGVFLALVLALGGYSFSNHRTSTSHSDSSAINRSIRMNHAAPSQELAQSILTESVKRQLKGKIEWN
GSGAFIINENKTTLDAKVASVPYADNKTKFVRGQTVPTVANALLSKATRQYKNREETGNGSTTWTPAGWHQVKHLSGEYN
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANTSYSTGQNFYETKIRKALDKNKRVRYRVTLIYANEQDLV
PVGSHIEGKSNDDNLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=331777 EHW89_RS03025 WP_126466645.1 623004..623849(+) (endA) [Streptococcus periodonticum strain KCOM 2412]
ATGGCGAGAAAGAAGTCCAACCAGAAAGTAGCGCAAAGTGTAGTAGGCGTATTTCTTGCACTCGTTCTTGCGCTGGGAGG
TTATTCTTTTAGCAATCATCGCACTAGTACGAGTCATTCTGATAGCTCTGCTATTAATCGAAGTATTCGGATGAATCATG
CAGCACCCAGTCAAGAATTAGCACAGAGTATTTTGACAGAATCTGTTAAACGACAGCTCAAAGGAAAGATCGAATGGAAT
GGATCGGGAGCCTTTATAATCAACGAAAATAAAACAACATTGGATGCCAAAGTTGCAAGCGTTCCTTACGCGGATAATAA
GACCAAGTTTGTTCGAGGTCAGACTGTTCCGACTGTAGCCAATGCTCTTTTATCCAAAGCCACTCGTCAGTATAAGAATC
GTGAGGAAACAGGAAATGGATCCACGACTTGGACACCTGCTGGTTGGCATCAGGTGAAGCATTTATCAGGTGAATACAAT
CATGCGGTTGACCGTGGGCATTTGTTGGGTTATGCTTTGATTGGCAACTTGAAAGGCTTTGATGCTTCGACCAGCAACCC
GAAAAACATCGCTGTGCAAACAGCTTGGGCTAATCAAGCCAATACTAGTTATTCTACGGGTCAAAATTTTTATGAAACAA
AGATACGTAAGGCACTAGACAAAAATAAACGAGTTCGGTATCGGGTGACTTTGATTTATGCCAATGAACAGGATTTGGTG
CCGGTTGGTTCGCATATTGAAGGCAAATCTAATGACGACAATCTGGAAATAAATGTCTTTGTCCCCAACGTACAGACAGG
AATTCGATTAAATTATCAGACAGGAGAAGTGACCGTTACCAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

76.991

80.427

0.619
  endA Streptococcus pneumoniae D39

76.991

80.427

0.619
  endA Streptococcus pneumoniae R6

76.991

80.427

0.619
  endA Streptococcus pneumoniae TIGR4

76.991

80.427

0.619

Multiple sequence alignment