Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EJ378_RS13270 Genome accession   NZ_CP034541
Coordinates   2753828..2756101 (-) Length   757 a.a.
NCBI ID   WP_126427889.1    Uniprot ID   -
Organism   Brevibacillus marinus strain SCSIO 07484     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2748828..2761101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ378_RS13250 - 2751665..2752720 (-) 1056 WP_126427886.1 AI-2E family transporter -
  EJ378_RS13255 - 2752813..2753001 (-) 189 WP_126427887.1 hypothetical protein -
  EJ378_RS13260 - 2753030..2753230 (-) 201 WP_126429706.1 hypothetical protein -
  EJ378_RS13265 - 2753247..2753756 (-) 510 WP_126427888.1 PRC-barrel domain-containing protein -
  EJ378_RS13270 recD2 2753828..2756101 (-) 2274 WP_126427889.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EJ378_RS13275 - 2756189..2757337 (-) 1149 WP_126427890.1 cysteine desulfurase family protein -
  EJ378_RS13280 cymR 2757385..2757807 (-) 423 WP_126427891.1 cysteine metabolism transcriptional regulator CymR -
  EJ378_RS13285 - 2757890..2759225 (-) 1336 Protein_2595 AAA family ATPase -
  EJ378_RS13290 - 2759533..2760288 (-) 756 WP_126427892.1 tRNA threonylcarbamoyladenosine dehydratase -

Sequence

Protein


Download         Length: 757 a.a.        Molecular weight: 85307.72 Da        Isoelectric Point: 6.6019

>NTDB_id=331732 EJ378_RS13270 WP_126427889.1 2753828..2756101(-) (recD2) [Brevibacillus marinus strain SCSIO 07484]
MTQQQTLSLFAEPFIRGQVVREIFFNEENWYGVYRFKVEETNEAISEREVVVVGHFPRPHPDEIYTLYGEWTVHPRFGSQ
YSVNRYVRETPKTAAGVEKYLASGLFEGIGKKTAKRIVAHLGTDALAVIADHPERLAEIPGISQERARKIYESVQKHRTL
ERTLIFLYDFGIGVHLALRIYQTYKEETMEILQQTPYRLVEEMDGIGFRRADEIARAVGVAASSLERVKAAALYVLKEAA
YGEGHVYLPAGELTARVGLLLAECGGHAFSDADLALAVQHLCEEQKLFLDEERAYLPALFFAESGLAKRLRYFAKRALPE
AYPAAEFYRALGKVEEELAITYAPSQREAVEQALKHGLLLLTGGPGTGKTTVIRAICSVFAELHGLSLDPRRYDPVDNPF
PILLAAPTGRAAKRMSEATGLPAMTIHRLLGYNGDSFEYDQERRMQGKLLIVDEMSMVDVLLAYQLFRALPDDIQIVLVG
DPDQLPSVGPGNVLKDMIDSGLIPQVHLRDIYRQAEQSSIIRLAHAIRAGEVPDDLLAPLPDRRFFTSSPQDLVQIVKQI
CAQAVKKGYTAKEIQVLSPMYKGYAGINQLNQELQALFNPPTAQKREVAFGELVFRTGDKVLQLVNNPEAQVYNGDIGEI
VAIFYPSENEQQEELLVVSFDGKEVVYKRSQYHQLTLAYCCSVHKSQGSEFPIVIMPFARQYYRMLRRKLVYTGVTRSKS
YLLLCGDPQAFRQAVQNDEESVRHTRLAQRLRQPETK

Nucleotide


Download         Length: 2274 bp        

>NTDB_id=331732 EJ378_RS13270 WP_126427889.1 2753828..2756101(-) (recD2) [Brevibacillus marinus strain SCSIO 07484]
TTGACGCAGCAGCAGACGCTCTCCCTGTTTGCCGAGCCGTTTATCCGCGGGCAAGTGGTGCGGGAAATTTTTTTCAACGA
AGAAAATTGGTACGGGGTGTACCGCTTTAAAGTGGAGGAGACAAACGAAGCGATCAGCGAGCGGGAAGTGGTCGTGGTGG
GCCACTTCCCCCGCCCCCATCCGGACGAGATCTACACGCTGTACGGCGAGTGGACGGTACACCCGCGCTTCGGCAGCCAG
TACAGCGTAAACCGCTACGTCCGCGAGACGCCGAAGACGGCGGCCGGCGTGGAGAAGTACCTGGCCAGCGGTTTGTTCGA
GGGAATCGGCAAAAAGACGGCCAAGCGTATTGTCGCGCACCTGGGGACGGACGCGCTGGCGGTGATTGCCGATCATCCGG
AGCGGTTGGCGGAGATTCCCGGCATTTCCCAGGAACGGGCGCGGAAGATCTACGAGTCGGTGCAAAAACACCGCACGTTG
GAACGGACGCTGATCTTCCTCTACGATTTCGGCATTGGCGTCCATCTCGCCCTCCGCATCTACCAGACGTACAAAGAAGA
AACCATGGAGATTCTGCAGCAGACGCCCTACCGGCTGGTGGAGGAGATGGACGGGATCGGCTTCAGGCGGGCTGATGAAA
TCGCCCGCGCAGTCGGCGTGGCTGCTTCCTCGCTGGAACGGGTGAAAGCGGCCGCGCTCTACGTCCTGAAAGAGGCAGCC
TATGGCGAAGGGCACGTCTACCTGCCGGCCGGCGAACTGACGGCACGGGTTGGCCTGCTCTTGGCGGAGTGCGGCGGCCA
TGCCTTTTCCGACGCGGATCTCGCGCTGGCCGTGCAGCATCTGTGCGAAGAGCAGAAGCTGTTCCTGGACGAGGAGCGCG
CCTACCTGCCCGCCCTCTTTTTTGCGGAGAGCGGGCTGGCCAAGCGGCTTCGCTATTTTGCCAAACGGGCATTGCCGGAA
GCTTATCCCGCAGCGGAATTTTACCGGGCGTTGGGCAAAGTGGAAGAAGAGTTGGCGATCACCTACGCTCCCAGTCAGCG
GGAAGCGGTGGAACAGGCCTTGAAGCATGGCTTGCTGCTTCTGACCGGCGGTCCGGGTACCGGCAAAACCACCGTCATCC
GGGCGATCTGCAGCGTTTTTGCCGAGCTGCACGGACTTTCCCTCGATCCGCGGCGGTACGATCCCGTTGACAACCCGTTC
CCGATCCTGCTCGCCGCGCCGACCGGCCGCGCCGCGAAGCGGATGAGCGAAGCCACCGGCCTGCCGGCGATGACGATTCA
CCGGCTGTTGGGATACAATGGCGACAGCTTTGAGTACGACCAGGAACGACGCATGCAGGGCAAGCTGTTGATTGTGGACG
AGATGTCGATGGTGGACGTGCTGCTCGCCTATCAGCTGTTTCGCGCCCTCCCGGATGATATCCAGATCGTGTTGGTCGGC
GATCCCGATCAGCTGCCGTCGGTGGGACCGGGCAACGTGTTGAAAGACATGATCGATTCCGGGCTCATCCCGCAGGTTCA
CCTTCGCGACATTTACCGCCAGGCAGAACAATCCTCGATCATCCGGCTGGCTCACGCGATTCGGGCCGGAGAGGTGCCGG
ATGATCTGTTGGCCCCGCTTCCGGATCGCAGATTTTTCACAAGTTCGCCACAAGATCTGGTGCAAATCGTGAAACAAATT
TGCGCCCAAGCCGTAAAAAAAGGGTACACCGCAAAAGAGATTCAAGTGCTTTCCCCGATGTACAAAGGGTACGCCGGCAT
CAACCAGCTCAATCAGGAGCTGCAGGCTTTGTTTAATCCGCCGACAGCGCAAAAGCGGGAAGTGGCGTTTGGAGAGCTCG
TGTTTCGCACGGGTGACAAAGTTCTGCAGCTGGTCAACAATCCGGAAGCGCAGGTGTACAACGGTGACATCGGCGAAATC
GTCGCCATTTTTTACCCCAGCGAAAACGAACAGCAGGAGGAACTGCTGGTCGTCTCGTTTGACGGCAAAGAAGTGGTGTA
TAAACGGTCCCAGTACCACCAATTGACTTTGGCCTATTGCTGTTCCGTGCACAAGTCGCAGGGAAGCGAGTTTCCCATCG
TGATCATGCCGTTTGCCCGCCAGTATTACCGGATGCTGCGGCGCAAACTGGTCTACACCGGGGTGACGCGGAGCAAATCG
TACCTCTTGCTTTGCGGTGACCCGCAGGCCTTTCGTCAGGCGGTGCAAAACGACGAAGAAAGCGTCCGTCACACCCGCCT
CGCGCAGCGGCTGCGTCAACCGGAAACAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-725)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

AAA domain (AAA_30)

(342-537)

Helix-hairpin-helix domain (HHH_5)

(107-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.8

98.943

0.493

Multiple sequence alignment