Detailed information NTG0331655

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: EJJ34_RS08885
• Genome accession: NZ_CP034484
• Coordinates: 1689722..1690501 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1684722..1695501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJJ34_RS08865 (EJJ34_08870)	trmFO	1685415..1686722 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
EJJ34_RS08870 (EJJ34_08875)	xerC	1686790..1687704 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
EJJ34_RS08875 (EJJ34_08880)	clpQ	1687717..1688262 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
EJJ34_RS08880 (EJJ34_08885)	hslU	1688270..1689682 (+)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
EJJ34_RS08885 (EJJ34_08890)	codY	1689722..1690501 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
EJJ34_RS08890 (EJJ34_08895)	flgB	1690881..1691270 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
EJJ34_RS08895 (EJJ34_08900)	flgC	1691270..1691722 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
EJJ34_RS08900 (EJJ34_08905)	fliE	1691733..1692053 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
EJJ34_RS08905 (EJJ34_08910)	fliF	1692099..1693709 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
EJJ34_RS08910 (EJJ34_08915)	fliG	1693722..1694738 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
EJJ34_RS08915 (EJJ34_08920)	fliH	1694731..1695483 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=331655 EJJ34_RS08885 WP_003220850.1 1689722..1690501(+) (codY) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=331655 EJJ34_RS08885 WP_003220850.1 1689722..1690501(+) (codY) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467