Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FGL73_RS06615 Genome accession   NZ_CP042408
Coordinates   1413131..1414090 (-) Length   319 a.a.
NCBI ID   WP_146978231.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408131..1419090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS06595 (FGL73_06595) - 1408441..1409187 (-) 747 WP_038601940.1 tyrosine-protein phosphatase -
  FGL73_RS06600 (FGL73_06600) - 1409389..1411191 (-) 1803 WP_146978230.1 oligopeptide ABC transporter substrate-binding protein -
  FGL73_RS06605 (FGL73_06605) oppC 1411297..1412181 (-) 885 WP_104141455.1 murein tripeptide/oligopeptide ABC transporter permease OppC -
  FGL73_RS06610 (FGL73_06610) oppB 1412191..1413150 (-) 960 WP_038601948.1 murein tripeptide/oligopeptide ABC transporter permease OppB -
  FGL73_RS06615 (FGL73_06615) amiE 1413131..1414090 (-) 960 WP_146978231.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF Regulator
  FGL73_RS06620 (FGL73_06620) oppD 1414087..1415103 (-) 1017 WP_146978232.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD -
  FGL73_RS06625 (FGL73_06625) rplT 1415329..1415688 (-) 360 WP_003132352.1 50S ribosomal protein L20 -
  FGL73_RS06630 (FGL73_06630) rpmI 1415883..1416083 (-) 201 WP_003132353.1 50S ribosomal protein L35 -
  FGL73_RS06635 (FGL73_06635) infC 1416212..1416706 (-) 495 WP_003132354.1 translation initiation factor IF-3 -
  FGL73_RS12810 - 1417169..1417297 (+) 129 WP_003132356.1 hypothetical protein -
  FGL73_RS06640 (FGL73_06640) - 1417316..1417864 (+) 549 WP_012898413.1 hypothetical protein -
  FGL73_RS06645 (FGL73_06645) - 1417876..1418580 (-) 705 WP_098393270.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36003.26 Da        Isoelectric Point: 9.4846

>NTDB_id=331590 FGL73_RS06615 WP_146978231.1 1413131..1414090(-) (amiE) [Lactococcus lactis strain CBA3619]
MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGQLIYKGQDVS
KKKIRNQLKYNKEVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKLDAKTENKRIHELLDIVGLPKQALEQYPFQFSGGQQ
QRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQKNLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRR
DIFDEPQHIYTKRLLSAIPSIDVTRRAENRENRLKVEQDFEDKKANFYDKDGHALPLKKLSQSHWAALPKGGENVESNY

Nucleotide


Download         Length: 960 bp        

>NTDB_id=331590 FGL73_RS06615 WP_146978231.1 1413131..1414090(-) (amiE) [Lactococcus lactis strain CBA3619]
GTGAGCGAAATTCTTAATTTAAAGGACTTAAAAGTTTATTATCCTATTCGATCTGGTTTCTTTAATCGAGTGACAGATAA
TGTTTTAGCCGTTGATGGAGTAGATTTAACGATTCATGAAGGAGAAACTGTCGGTTTAGTTGGTGAATCTGGCTCTGGAA
AATCAACGATTGGCAAAACAATTGTTGGTTTAGAACAAATGACATCAGGACAATTGATTTACAAAGGACAAGATGTCAGC
AAGAAAAAGATAAGAAACCAGCTCAAATACAATAAAGAGGTTCAAATGATTTTTCAAGATGCATTTTCGAGTTTGAATCC
ACGGAAAACAATTTACGATATCATTGCGGAGCCTATTCGGAATTTTGAAAAATTAGATGCTAAGACAGAAAATAAACGGA
TTCATGAATTATTGGATATTGTTGGACTACCTAAACAAGCTTTAGAACAGTATCCTTTCCAATTTTCTGGAGGTCAACAA
CAAAGAATTGGAATCGCACGGGCAGTTGCTACTAATCCTAAGTTAATTGTGGCAGATGAACCAGTTTCAGCATTAGACTT
ATCTGTTCAAGCTCAAGTTTTGAATTTCATGAAGCTCATTCAAAAGAACTTGGGAATTGCATTTCTTTTTATTTCTCATG
ATTTAGGGGTTGTCCGCCATATGACAGATAATATTGCAGTCATGCACAACGGTCGAATTGTCGAAAAAGGAACACGAAGA
GATATTTTTGATGAGCCACAGCACATTTATACTAAACGACTCTTATCTGCTATCCCTTCGATCGATGTTACAAGAAGAGC
GGAAAATCGGGAAAACCGTCTAAAAGTTGAACAAGACTTTGAGGATAAAAAAGCAAACTTTTATGATAAAGACGGACACG
CTTTGCCCTTGAAAAAATTAAGTCAGAGCCATTGGGCAGCTTTGCCAAAAGGAGGGGAAAATGTGGAAAGTAATTATTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(234-271)

ABC transporter (ABC_tran)

(32-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.254

100

0.376
  amiE Streptococcus thermophilus LMG 18311

36.254

100

0.376
  amiE Streptococcus thermophilus LMD-9

36.254

100

0.376
  amiF Streptococcus thermophilus LMD-9

47.718

75.549

0.361
  amiF Streptococcus thermophilus LMG 18311

47.718

75.549

0.361