Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPSJM_RS05555 Genome accession   NC_014560
Coordinates   1167305..1168078 (+) Length   257 a.a.
NCBI ID   WP_000449233.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1162305..1173078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS05550 (HPSJM_05750) hopL 1163579..1167292 (+) 3714 WP_000591292.1 Hop family outer membrane protein HopL -
  HPSJM_RS05555 (HPSJM_05755) proC 1167305..1168078 (+) 774 WP_000449233.1 pyrroline-5-carboxylate reductase Machinery gene
  HPSJM_RS05560 (HPSJM_05760) fic 1168105..1168638 (+) 534 WP_000549887.1 protein adenylyltransferase Fic -
  HPSJM_RS05565 (HPSJM_05765) ybeY 1168883..1169305 (-) 423 WP_000889573.1 rRNA maturation RNase YbeY -
  HPSJM_RS05570 (HPSJM_05770) - 1169361..1169855 (-) 495 WP_000516050.1 flavodoxin -
  HPSJM_RS05575 (HPSJM_05775) - 1169946..1170527 (-) 582 WP_013356443.1 DedA family protein -
  HPSJM_RS05580 (HPSJM_05780) ccoS 1170650..1170847 (+) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPSJM_RS05585 (HPSJM_05785) - 1170875..1171849 (+) 975 WP_000076633.1 NAD(P)-binding domain-containing protein -
  HPSJM_RS05590 (HPSJM_05790) - 1171857..1173017 (-) 1161 WP_000944788.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28201.86 Da        Isoelectric Point: 8.8717

>NTDB_id=33115 HPSJM_RS05555 WP_000449233.1 1167305..1168078(+) (proC) [Helicobacter pylori SJM180]
METLQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVRVGNEEQVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPETIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=33115 HPSJM_RS05555 WP_000449233.1 1167305..1168078(+) (proC) [Helicobacter pylori SJM180]
ATGGAAACCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAGATCTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGTGCACTAGCTGGCGTGAGTTTTGAAGCTTTAAGTAATGCGATTAATTCTTT
GCATTACTTAAAATGCATGCCTAACATTGCGAGCAAATTCGCCCTATCTTCTACGGCGGTGTGTGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGCATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGCGTGGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGCATCAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAGTTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGACGATCATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTCATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCGTCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.549

98.444

0.37

Multiple sequence alignment