Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FKV26_RS12050 Genome accession   NZ_CP042299
Coordinates   2659156..2660991 (-) Length   611 a.a.
NCBI ID   WP_001995011.1    Uniprot ID   -
Organism   Vibrio cholerae O1 strain AAS91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2654156..2665991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV26_RS12030 (FKV26_12325) fhuA 2654232..2656331 (-) 2100 WP_001244540.1 TonB-dependent siderophore receptor FhuA -
  FKV26_RS12035 (FKV26_12330) - 2656466..2658295 (+) 1830 WP_000488009.1 ABC transporter ATP-binding protein -
  FKV26_RS12040 (FKV26_12335) - 2658331..2658693 (-) 363 WP_001235441.1 hypothetical protein -
  FKV26_RS12045 (FKV26_12340) - 2658864..2659163 (-) 300 WP_000807416.1 DUF3630 family protein -
  FKV26_RS12050 (FKV26_12345) recQ 2659156..2660991 (-) 1836 WP_001995011.1 ATP-dependent DNA helicase RecQ Machinery gene
  FKV26_RS12055 (FKV26_12350) rarD 2661218..2662060 (+) 843 WP_000264463.1 EamA family transporter RarD -
  FKV26_RS12060 (FKV26_12355) ggt 2662234..2663988 (+) 1755 WP_001104642.1 gamma-glutamyltransferase -
  FKV26_RS12065 (FKV26_12360) - 2664145..2664948 (+) 804 WP_033935852.1 AraC family transcriptional regulator -
  FKV26_RS12070 (FKV26_12365) - 2665023..2665691 (+) 669 WP_001004602.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69094.40 Da        Isoelectric Point: 7.1164

>NTDB_id=331056 FKV26_RS12050 WP_001995011.1 2659156..2660991(-) (recQ) [Vibrio cholerae O1 strain AAS91]
MTATLMAESSALLATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=331056 FKV26_RS12050 WP_001995011.1 2659156..2660991(-) (recQ) [Vibrio cholerae O1 strain AAS91]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCCTTGCCACCCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTTGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCAACTGC
GGATGACGCGACCCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACACAGCGTGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGTGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGCGATAAGCCGTGT
GGCAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCGCTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATCGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCCTTGCTGCGCGG
AGAAATGAATATTGAGCTGGCGGTGCCGCGTTTAGATACCGCGGCGCGCGCCGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.468

97.872

0.396

Multiple sequence alignment