Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   EJJ14_RS07140 Genome accession   NZ_CP034393
Coordinates   1367949..1368464 (-) Length   171 a.a.
NCBI ID   WP_002867318.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain CLB104     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362949..1373464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ14_RS07125 (EJJ14_07125) - 1363060..1364877 (-) 1818 WP_125975170.1 motility associated factor glycosyltransferase family protein -
  EJJ14_RS07130 (EJJ14_07130) - 1364874..1366697 (-) 1824 WP_125975174.1 motility associated factor glycosyltransferase family protein -
  EJJ14_RS07135 (EJJ14_07135) - 1366707..1367949 (-) 1243 Protein_1397 DUF2920 family protein -
  EJJ14_RS07140 (EJJ14_07140) ctsG 1367949..1368464 (-) 516 WP_002867318.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EJJ14_RS07145 (EJJ14_07145) tsaD 1368465..1369472 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  EJJ14_RS07150 (EJJ14_07150) - 1369469..1370863 (-) 1395 WP_002867316.1 M99 family carboxypeptidase catalytic domain-containing protein -
  EJJ14_RS07155 (EJJ14_07155) dxr 1370865..1371935 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  EJJ14_RS07160 (EJJ14_07160) cdsA 1371932..1372657 (-) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  EJJ14_RS07165 (EJJ14_07165) - 1372666..1373004 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.57 Da        Isoelectric Point: 6.4683

>NTDB_id=331056 EJJ14_RS07140 WP_002867318.1 1367949..1368464(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain CLB104]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=331056 EJJ14_RS07140 WP_002867318.1 1367949..1368464(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain CLB104]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment