Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPSJM_RS02125 Genome accession   NC_014560
Coordinates   431184..432359 (-) Length   391 a.a.
NCBI ID   WP_000060232.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426184..437359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS02090 - 426507..426821 (+) 315 WP_001265941.1 hypothetical protein -
  HPSJM_RS02095 (HPSJM_02195) - 426799..427566 (+) 768 WP_000602425.1 RNA polymerase sigma factor FliA -
  HPSJM_RS02100 (HPSJM_02200) fliM 427559..428623 (+) 1065 WP_000763596.1 flagellar motor switch protein FliM -
  HPSJM_RS02105 (HPSJM_02205) fliY 428627..429490 (+) 864 WP_001150611.1 flagellar motor switch protein FliY -
  HPSJM_RS02110 (HPSJM_02210) - 429519..430055 (+) 537 WP_000963974.1 YhcH/YjgK/YiaL family protein -
  HPSJM_RS02115 (HPSJM_02215) - 430052..430549 (+) 498 WP_000780265.1 DUF2147 domain-containing protein -
  HPSJM_RS02120 (HPSJM_02220) fur 430572..431024 (-) 453 WP_000824996.1 ferric iron uptake transcriptional regulator -
  HPSJM_RS02125 (HPSJM_02225) rarA 431184..432359 (-) 1176 WP_000060232.1 replication-associated recombination protein A Machinery gene
  HPSJM_RS02130 (HPSJM_02230) - 432356..432727 (-) 372 WP_000332999.1 heat shock protein transcriptional repressor HspR -
  HPSJM_RS02135 (HPSJM_02235) - 432737..433603 (-) 867 WP_000045901.1 DnaJ family protein -
  HPSJM_RS02140 (HPSJM_02240) - 433771..435021 (+) 1251 WP_001199562.1 hypothetical protein -
  HPSJM_RS02145 (HPSJM_02245) - 435127..435964 (-) 838 Protein_411 5'-3' exonuclease -
  HPSJM_RS02150 (HPSJM_02250) - 436216..437112 (-) 897 WP_000697567.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43776.31 Da        Isoelectric Point: 8.5279

>NTDB_id=33103 HPSJM_RS02125 WP_000060232.1 431184..432359(-) (rarA) [Helicobacter pylori SJM180]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=33103 HPSJM_RS02125 WP_000060232.1 431184..432359(-) (rarA) [Helicobacter pylori SJM180]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTAG
CTCAAATCATAGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACAGATTTTAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAG
GCTTTAGCATTGCTCAAAAAACAAATAGAGCCTGACGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTACTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCATTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCCTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTACCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.399

Multiple sequence alignment