Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EI377_RS07730 Genome accession   NZ_CP034358
Coordinates   1622348..1624207 (+) Length   619 a.a.
NCBI ID   WP_066678242.1    Uniprot ID   -
Organism   Clostridium septicum strain VAT12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617348..1629207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EI377_RS17125 - 1617374..1617706 (-) 333 WP_242871386.1 hypothetical protein -
  EI377_RS17750 - 1617657..1617791 (+) 135 WP_265586012.1 hypothetical protein -
  EI377_RS17130 - 1617907..1618038 (-) 132 WP_227909524.1 DeoR family transcriptional regulator -
  EI377_RS07710 (EI377_07710) - 1618047..1618376 (+) 330 WP_227909615.1 transaldolase family protein -
  EI377_RS07715 (EI377_07715) - 1618602..1619387 (+) 786 WP_066678203.1 Cof-type HAD-IIB family hydrolase -
  EI377_RS07720 (EI377_07720) - 1619421..1619864 (-) 444 WP_066678250.1 MarR family transcriptional regulator -
  EI377_RS07725 (EI377_07725) - 1620103..1622355 (+) 2253 WP_066678248.1 ABC transporter ATP-binding protein -
  EI377_RS07730 (EI377_07730) rcrQ 1622348..1624207 (+) 1860 WP_066678242.1 ABC transporter ATP-binding protein Regulator
  EI377_RS17135 - 1624509..1624676 (+) 168 WP_243122305.1 transposase zinc-binding domain-containing protein -
  EI377_RS17140 - 1624751..1625056 (+) 306 WP_243122391.1 transposase -
  EI377_RS17145 - 1625053..1625321 (+) 269 Protein_1533 transposase -
  EI377_RS17150 - 1625318..1625590 (+) 273 WP_243122314.1 hypothetical protein -
  EI377_RS07740 (EI377_07740) - 1625605..1625787 (+) 183 WP_128499188.1 hypothetical protein -
  EI377_RS07745 (EI377_07745) thiD 1626328..1627128 (+) 801 WP_066678240.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EI377_RS07750 (EI377_07750) thiM 1627156..1627935 (+) 780 WP_066678238.1 hydroxyethylthiazole kinase -
  EI377_RS07755 (EI377_07755) tenA 1627937..1628596 (+) 660 WP_066678236.1 thiaminase II -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68709.54 Da        Isoelectric Point: 6.3363

>NTDB_id=330940 EI377_RS07730 WP_066678242.1 1622348..1624207(+) (rcrQ) [Clostridium septicum strain VAT12]
MSKKEVSMRKGFGGGPMGGAMRGGEKAKDFKGTMKNLMKYLSPFKWAMLLVVVFAIGSAAFSIIGPKILGKATNKIFDGL
MTKLTGVSGAGIDFTYIGKVLLFLLVLYLISALFSFIQGFVMSGISQKVSYNLRKEISEKINRMPLKYFDTKTHGEVLSR
VTNDVDSVSQNLNQSMTQVITSITTLIGILIMMFSISWIMTIAALLILPISMIFISIVVKKSQKYFKSQQEYLGHVNGQV
EEVYGGHNIVKAFNGEEDAIEEFDRLNSTLYNSAWKSQFLSGMMMPVMTFIGNLGYVMVSILGGWLAIKKTIGVGDILSF
IQYVRSFTQPIAQTAQVANLLQSTAAAAERVFEFLEEEEEDQFAENPVNIENINGQVTFENVSFGYNPEKTIINNFNAKI
KPGQKVAIVGPTGAGKTTIVKLLMRFYDVNSGEILIDGHNIKDFNRDDLRNLFGMVLQDTWLFNGSIMENIRYGKLGSTD
EEVIKAAKAAHVDHFVKTLPDGYNMELNEEANNVSQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENLM
EGRTSFIIAHRLSTIREADLILVMKDGDIIEQGTHEELLKANGFYATLYNSQFENSEAS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=330940 EI377_RS07730 WP_066678242.1 1622348..1624207(+) (rcrQ) [Clostridium septicum strain VAT12]
ATGAGTAAAAAAGAAGTTAGTATGAGAAAAGGCTTTGGTGGCGGTCCTATGGGTGGAGCCATGAGAGGTGGCGAAAAAGC
TAAGGATTTTAAAGGTACTATGAAAAACCTTATGAAATATTTAAGTCCTTTTAAATGGGCAATGCTTTTAGTAGTAGTTT
TTGCAATAGGTAGTGCAGCTTTTTCTATTATAGGTCCTAAGATTTTAGGTAAGGCAACAAATAAGATTTTTGATGGACTT
ATGACAAAGCTTACAGGAGTTTCTGGAGCTGGTATAGATTTTACTTATATAGGTAAAGTTCTATTATTCTTACTTGTATT
ATATTTAATAAGTGCTTTATTTTCATTTATACAAGGGTTTGTAATGTCAGGAATTTCTCAAAAAGTATCTTATAATTTAA
GAAAAGAAATTTCAGAGAAAATTAATCGTATGCCTCTTAAATATTTTGATACTAAAACACATGGTGAAGTATTATCAAGA
GTTACAAATGATGTAGATAGTGTAAGTCAAAACTTAAACCAAAGTATGACTCAAGTTATTACATCAATTACCACTTTAAT
TGGGATACTTATAATGATGTTTTCTATTAGTTGGATAATGACAATTGCAGCACTATTAATATTGCCTATATCCATGATAT
TTATATCAATAGTAGTAAAAAAATCACAAAAGTATTTTAAATCACAACAAGAGTATTTAGGTCATGTAAATGGTCAAGTT
GAAGAAGTATATGGTGGTCACAATATAGTAAAAGCATTTAATGGTGAAGAAGATGCTATAGAAGAGTTTGATAGATTAAA
TAGTACTTTATATAATTCAGCATGGAAGTCACAATTTTTATCAGGAATGATGATGCCTGTAATGACTTTTATAGGAAATC
TAGGTTATGTAATGGTATCTATTCTTGGTGGATGGCTTGCTATTAAGAAAACAATAGGAGTTGGAGATATTCTTTCATTT
ATTCAATATGTAAGAAGTTTTACACAACCAATTGCTCAAACTGCTCAAGTAGCTAATTTATTACAATCAACAGCAGCTGC
AGCTGAAAGAGTATTTGAATTTTTAGAAGAAGAAGAAGAAGATCAGTTTGCAGAAAATCCAGTTAATATCGAAAATATTA
ACGGTCAAGTTACATTTGAAAATGTTAGTTTTGGATATAATCCAGAAAAGACAATAATAAATAATTTTAATGCTAAAATA
AAGCCAGGACAAAAGGTTGCAATAGTAGGTCCTACAGGAGCAGGAAAAACTACGATTGTAAAACTACTAATGCGTTTTTA
TGATGTAAATAGTGGAGAAATTCTTATAGATGGTCATAATATAAAGGATTTTAATAGAGATGATTTAAGAAACCTATTTG
GTATGGTTCTTCAAGATACTTGGTTATTTAATGGCTCAATTATGGAAAATATAAGATATGGAAAACTAGGTTCAACAGAT
GAAGAAGTTATTAAAGCAGCTAAAGCAGCTCATGTTGATCATTTTGTAAAAACACTTCCAGATGGATATAATATGGAATT
AAATGAAGAAGCTAATAATGTATCACAAGGTCAAAAGCAGTTATTAACAATAGCTCGTGCTATTTTATCAGATCCAAAAA
TATTGATTCTTGATGAAGCAACAAGTTCAGTAGATACTCGTACTGAAGTTTTAATTCAAAAAGCAATGGAAAACCTTATG
GAAGGTAGAACAAGTTTTATAATAGCACATAGATTATCAACTATTAGAGAAGCAGATTTAATTTTAGTAATGAAAGATGG
AGATATTATAGAACAAGGAACTCATGAAGAATTGCTAAAAGCAAATGGATTCTATGCAACTCTTTATAATAGCCAATTTG
AAAATTCAGAAGCATCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.659

94.184

0.496

Multiple sequence alignment