Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FQ758_RS24350 Genome accession   NZ_CP042269
Coordinates   4959982..4960407 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain HOU1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4954982..4965407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQ758_RS24335 (FQ758_24330) pilX 4955546..4956133 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  FQ758_RS24340 (FQ758_24335) pilY1 4956145..4959636 (+) 3492 WP_126532747.1 type 4a pilus biogenesis protein PilY1 -
  FQ758_RS24345 (FQ758_24340) pilY2 4959638..4959985 (+) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  FQ758_RS24350 (FQ758_24345) comF 4959982..4960407 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  FQ758_RS24355 (FQ758_24350) ispH 4960454..4961398 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FQ758_RS24360 (FQ758_24355) fkpB 4961484..4961924 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FQ758_RS24365 (FQ758_24360) lspA 4961917..4962426 (-) 510 WP_003094728.1 signal peptidase II -
  FQ758_RS24370 (FQ758_24365) ileS 4962419..4965250 (-) 2832 WP_023103515.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=330841 FQ758_RS24350 WP_003094721.1 4959982..4960407(+) (comF) [Pseudomonas aeruginosa strain HOU1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=330841 FQ758_RS24350 WP_003094721.1 4959982..4960407(+) (comF) [Pseudomonas aeruginosa strain HOU1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383