Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D8X56_RS00175 Genome accession   NZ_CP034314
Coordinates   13926..14189 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8926..19189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS00145 (D8X56_00145) groES 9209..9565 (-) 357 WP_000671949.1 co-chaperone GroES -
  D8X56_RS00155 (D8X56_00155) dnaG 9851..11530 (+) 1680 WP_125301214.1 DNA primase -
  D8X56_RS00160 (D8X56_00160) - 11527..12579 (+) 1053 WP_125301216.1 MnmA/TRMU family protein -
  D8X56_RS00165 (D8X56_00165) - 12672..13499 (+) 828 WP_125301218.1 DUF5718 family protein -
  D8X56_RS00170 (D8X56_00170) comB2 13645..13926 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D8X56_RS00175 (D8X56_00175) comB3 13926..14189 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  D8X56_RS00180 (D8X56_00180) comB4 14191..16554 (+) 2364 WP_125301220.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D8X56_RS00190 (D8X56_00190) - 16868..18208 (+) 1341 WP_206426563.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=330620 D8X56_RS00175 WP_000584956.1 13926..14189(+) (comB3) [Helicobacter pylori strain HP42K]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=330620 D8X56_RS00175 WP_000584956.1 13926..14189(+) (comB3) [Helicobacter pylori strain HP42K]
ATGATTATTCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCGGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment