Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPPC_RS02075 Genome accession   NC_014555
Coordinates   416398..417573 (-) Length   391 a.a.
NCBI ID   WP_000060201.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 411398..422573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS02040 (HPPC_02090) - 411717..412031 (+) 315 WP_000868000.1 hypothetical protein -
  HPPC_RS02045 (HPPC_02095) - 412009..412785 (+) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  HPPC_RS02050 (HPPC_02100) fliM 412778..413842 (+) 1065 WP_000763578.1 flagellar motor switch protein FliM -
  HPPC_RS02055 (HPPC_02105) fliY 413846..414709 (+) 864 WP_001150703.1 flagellar motor switch protein FliY -
  HPPC_RS02060 (HPPC_02110) - 414736..415272 (+) 537 WP_000963999.1 YhcH/YjgK/YiaL family protein -
  HPPC_RS02065 (HPPC_02115) - 415269..415766 (+) 498 WP_000780304.1 DUF2147 domain-containing protein -
  HPPC_RS02070 (HPPC_02120) fur 415786..416238 (-) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  HPPC_RS02075 (HPPC_02125) rarA 416398..417573 (-) 1176 WP_000060201.1 replication-associated recombination protein A Machinery gene
  HPPC_RS02080 (HPPC_02130) - 417570..417941 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPPC_RS02085 (HPPC_02135) - 417951..418817 (-) 867 WP_000045774.1 DnaJ family protein -
  HPPC_RS02090 (HPPC_02140) - 418985..420235 (+) 1251 WP_001199500.1 hypothetical protein -
  HPPC_RS02095 (HPPC_02145) - 420298..421134 (-) 837 WP_000556235.1 5'-3' exonuclease -
  HPPC_RS08685 - 421160..421357 (-) 198 Protein_405 hypothetical protein -
  HPPC_RS02100 (HPPC_02150) - 421395..422291 (-) 897 WP_000697556.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43812.39 Da        Isoelectric Point: 8.0540

>NTDB_id=33062 HPPC_RS02075 WP_000060201.1 416398..417573(-) (rarA) [Helicobacter pylori PeCan4]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCVK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLTCSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=33062 HPPC_RS02075 WP_000060201.1 416398..417573(-) (rarA) [Helicobacter pylori PeCan4]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCACGCACTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGTTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAATCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCGTTAATCAAGTCTTTGAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGACTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment