Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | EHC66_RS01850 | Genome accession | NZ_CP034294 |
| Coordinates | 357357..357872 (+) | Length | 171 a.a. |
| NCBI ID | WP_159404023.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 20140829008-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 352357..362872
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC66_RS01830 (EHC66_01875) | - | 352490..355060 (-) | 2571 | WP_005480476.1 | penicillin-binding protein 1A | - |
| EHC66_RS01835 (EHC66_01880) | pilM | 355203..356219 (+) | 1017 | WP_017449463.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| EHC66_RS01840 (EHC66_01885) | pilN | 356203..356781 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| EHC66_RS01845 (EHC66_01890) | pilO | 356774..357367 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EHC66_RS01850 (EHC66_01895) | pilP | 357357..357872 (+) | 516 | WP_159404023.1 | pilus assembly protein PilP | Machinery gene |
| EHC66_RS01855 (EHC66_01900) | pilQ | 357904..359652 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| EHC66_RS01860 (EHC66_01905) | aroK | 359841..360359 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| EHC66_RS01865 (EHC66_01910) | aroB | 360391..361491 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18916.08 Da Isoelectric Point: 10.5314
>NTDB_id=330481 EHC66_RS01850 WP_159404023.1 357357..357872(+) (pilP) [Vibrio parahaemolyticus strain 20140829008-1]
MRNKSLLTVLVSALLAGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKLGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLAGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKLGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=330481 EHC66_RS01850 WP_159404023.1 357357..357872(+) (pilP) [Vibrio parahaemolyticus strain 20140829008-1]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGCCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACTAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGCCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACTAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
83.041 |
100 |
0.83 |
| pilP | Vibrio cholerae strain A1552 |
57.558 |
100 |
0.579 |