Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D5R83_RS01595 Genome accession   NZ_CP042211
Coordinates   306714..307487 (-) Length   257 a.a.
NCBI ID   WP_000404449.1    Uniprot ID   -
Organism   Helicobacter pylori strain B128 7.13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301714..312487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R83_RS01560 (D5R83_01560) - 301940..303100 (+) 1161 WP_000944809.1 HP1165 family MFS efflux transporter -
  D5R83_RS01565 (D5R83_01565) - 303107..304078 (-) 972 WP_000371801.1 NAD(P)/FAD-dependent oxidoreductase -
  D5R83_RS01570 (D5R83_01570) ccoS 304104..304301 (-) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D5R83_RS01575 (D5R83_01575) - 304426..305007 (+) 582 WP_001154562.1 DedA family protein -
  D5R83_RS01580 (D5R83_01580) - 305098..305592 (+) 495 WP_000516080.1 flavodoxin -
  D5R83_RS01585 (D5R83_01585) ybeY 305646..306068 (+) 423 WP_000889532.1 rRNA maturation RNase YbeY -
  D5R83_RS01590 (D5R83_01590) - 306158..306686 (-) 529 Protein_303 Fic family protein -
  D5R83_RS01595 (D5R83_01595) proC 306714..307487 (-) 774 WP_000404449.1 pyrroline-5-carboxylate reductase Machinery gene
  D5R83_RS01600 (D5R83_01600) hopL 307500..311168 (-) 3669 WP_000591328.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28205.01 Da        Isoelectric Point: 9.1275

>NTDB_id=330427 D5R83_RS01595 WP_000404449.1 306714..307487(-) (proC) [Helicobacter pylori strain B128 7.13]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFKALSDAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=330427 D5R83_RS01595 WP_000404449.1 306714..307487(-) (proC) [Helicobacter pylori strain B128 7.13]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATCACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATAG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATAAATTCTTT
ACATTACTTAAAATGCATGCCCAATATTGCGAGTAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGCATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGTGTAGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCAAAAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366