Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EHC70_RS15405 Genome accession   NZ_CP034285
Coordinates   3141398..3142123 (+) Length   241 a.a.
NCBI ID   WP_069485175.1    Uniprot ID   A0AAW8Q361
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3136398..3147123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS15390 (EHC70_15600) - 3137501..3139822 (+) 2322 WP_159404211.1 Tex family protein -
  EHC70_RS15395 (EHC70_15605) - 3139958..3140422 (-) 465 WP_005459035.1 hypothetical protein -
  EHC70_RS15400 (EHC70_15610) bioH 3140546..3141313 (-) 768 WP_193237427.1 pimeloyl-ACP methyl ester esterase BioH -
  EHC70_RS15405 (EHC70_15615) comF 3141398..3142123 (+) 726 WP_069485175.1 ComF family protein Machinery gene
  EHC70_RS15410 (EHC70_15620) nfuA 3142221..3142805 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  EHC70_RS15415 (EHC70_15625) nudE 3143026..3143595 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  EHC70_RS15420 (EHC70_15630) cysQ 3143636..3144463 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EHC70_RS15425 (EHC70_15635) - 3144748..3145509 (-) 762 WP_005496730.1 type II secretion system protein N -
  EHC70_RS15430 (EHC70_15640) - 3145511..3146002 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27620.77 Da        Isoelectric Point: 9.1620

>NTDB_id=330424 EHC70_RS15405 WP_069485175.1 3141398..3142123(+) (comF) [Vibrio parahaemolyticus strain 20140624012-1]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=330424 EHC70_RS15405 WP_069485175.1 3141398..3142123(+) (comF) [Vibrio parahaemolyticus strain 20140624012-1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGTTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATATTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGTCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment