Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FP477_RS11055 Genome accession   NZ_CP042046
Coordinates   2152369..2153142 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain B2-7A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2147369..2158142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP477_RS11035 (FP477_11035) trmFO 2147713..2149020 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  FP477_RS11040 (FP477_11040) xerC 2149437..2150333 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  FP477_RS11045 (FP477_11045) hslV 2150330..2150875 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  FP477_RS11050 (FP477_11050) hslU 2150941..2152344 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  FP477_RS11055 (FP477_11055) codY 2152369..2153142 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FP477_RS11060 (FP477_11060) - 2153193..2153285 (+) 93 WP_031788481.1 hypothetical protein -
  FP477_RS11065 (FP477_11065) rpsB 2153484..2154251 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  FP477_RS11070 (FP477_11070) - 2154285..2154398 (+) 114 WP_001789890.1 hypothetical protein -
  FP477_RS11075 (FP477_11075) tsf 2154433..2155314 (+) 882 WP_000201387.1 translation elongation factor Ts -
  FP477_RS11080 (FP477_11080) pyrH 2155451..2156173 (+) 723 WP_000057330.1 UMP kinase -
  FP477_RS11085 (FP477_11085) frr 2156192..2156746 (+) 555 WP_001280006.1 ribosome recycling factor -
  FP477_RS11090 (FP477_11090) - 2157119..2157889 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=330122 FP477_RS11055 WP_000055337.1 2152369..2153142(+) (codY) [Staphylococcus aureus strain B2-7A]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=330122 FP477_RS11055 WP_000055337.1 2152369..2153142(+) (codY) [Staphylococcus aureus strain B2-7A]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment