Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EBA29_RS08125 Genome accession   NZ_CP034203
Coordinates   1618282..1619061 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 83     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613282..1624061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA29_RS08105 (EBA29_01664) trmFO 1613969..1615276 (+) 1308 WP_029973471.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EBA29_RS08110 (EBA29_01665) xerC 1615346..1616263 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  EBA29_RS08115 (EBA29_01666) hslV 1616279..1616824 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  EBA29_RS08120 (EBA29_01667) hslU 1616832..1618244 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  EBA29_RS08125 (EBA29_01668) codY 1618282..1619061 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EBA29_RS08130 (EBA29_01669) flgB 1619414..1619803 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  EBA29_RS08135 (EBA29_01670) flgC 1619803..1620255 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  EBA29_RS08140 (EBA29_01671) fliE 1620266..1620586 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  EBA29_RS08145 (EBA29_01672) fliF 1620629..1622239 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  EBA29_RS08150 (EBA29_01673) fliG 1622252..1623268 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  EBA29_RS08155 (EBA29_01674) fliH 1623261..1624016 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=329793 EBA29_RS08125 WP_003154263.1 1618282..1619061(+) (codY) [Bacillus velezensis strain 83]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=329793 EBA29_RS08125 WP_003154263.1 1618282..1619061(+) (codY) [Bacillus velezensis strain 83]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment